RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 IFNLR1Q8IU57 520 aaPredicted RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 C1orf87Q8N0U7 546 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 NHLRC2Q8NBF2 726 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 FAM83FQ8NEG4 500 aaPredicted RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 RNF121Q9H920 327 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 FBRSL1Q9HCM7 1045 aaKnown RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 SACM1LQ9NTJ5 587 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 NLGN3Q9NZ94 848 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 A0A0U1RQK1 487 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 A1BGP04217 495 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 ERBB2P04626 1255 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 AMY2BP19961 511 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 IMPA1P29218 277 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 POU4F3Q15319 338 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 EARS2Q5JPH6 523 aaKnown RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 ADGRD1Q6QNK2 874 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 UBE2R2Q712K3 238 aaPredicted RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 TMPRSS11BQ86T26 416 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 TRAPPC5Q8IUR0 188 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 OR13C2Q8NGS9 318 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 SLC5A11Q8WWX8 675 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 AZIN2Q96A70 460 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 SH2D3AQ9BRG2 576 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 TAPBPLQ9BX59 468 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 GLOD4Q9HC38 313 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 TBX22Q9Y458 520 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 KDM6AO15550 1401 aaPredicted RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 ATP10BO94823 1461 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 GGT3PA6NGU5 568 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 ARGFXA6NJG6 315 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 IL7RP16871 459 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 TSPAN8P19075 237 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 PSMB4P28070 264 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 GGT2P36268 569 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 ADGRF1Q5T601 910 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 ARHGAP40Q5TG30 622 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 INTS5Q6P9B9 1019 aaKnown RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 RBMS3Q6XE24 437 aaKnown RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 ITIH5Q86UX2 942 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 KCNRGQ8N5I3 272 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 SPACA7Q96KW9 195 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 ADAD1Q96M93 576 aaKnown RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 MFFQ9GZY8 342 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 ZNF518AQ6AHZ1 1483 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 M0QZK8 103 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 GGCTO75223 188 aaKnown RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 C2P06681 752 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ZNF16P17020 682 aaPredicted RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 RPS5P46782 204 aaKnown RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 RAB28P51157 221 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 CLCN7P51798 805 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 H3F3AP84243 136 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 CES3Q6UWW8 571 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 FAM131BQ86XD5 332 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 OR6C4Q8NGE1 309 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 RAB3CQ96E17 227 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 FAXDC2Q96IV6 333 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 OR51B5Q9H339 312 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 CARS2Q9HA77 564 aaKnown RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 PATZ1Q9HBE1 687 aaKnown RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 MKKSQ9NPJ1 570 aaPredicted RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 MIOSQ9NXC5 875 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 EXOGQ9Y2C4 368 aaKnown RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 FAM189A1O60320 539 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 G0S2P27469 103 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 TLE4Q04727 773 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ARHGAP19Q14CB8 494 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 SLC1A5Q15758 541 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 METTL2BQ6P1Q9 378 aaKnown RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 B3GLCTQ6Y288 498 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ZDHHC1Q8WTX9 485 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ZUFSPQ96AP4 578 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 METTL2AQ96IZ6 378 aaKnown RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 OR52B2Q96RD2 323 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 PINK1Q9BXM7 581 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ATG10Q9H0Y0 220 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 RPF2Q9H7B2 306 aaKnown RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 NUDT4Q9NZJ9 180 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 FLVCR2Q9UPI3 526 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 CDC42BPBQ9Y5S2 1711 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 SIGLEC16A6NMB1 481 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 PIP5K1BO14986 540 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 FABP1P07148 127 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ITPK1Q13572 414 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 GRIN2CQ14957 1233 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 RSU1Q15404 277 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 CPSF6Q16630 551 aaKnown RBP eCLIP8.49□□□□□ -1.05
LIG3-202ENST00000378526 RALGPS1Q5JS13 557 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 FAM35AQ86V20 835 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 PPP1R3BQ86XI6 285 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 NTAN1Q96AB6 310 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 MYO19Q96H55 970 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 AAASQ9NRG9 546 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ZNF586Q9NXT0 402 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 UBFD1O14562 309 aaKnown RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 SDC3O75056 442 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 SLC22A5O76082 557 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 RASAL1O95294 804 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 TTC37Q6PGP7 1564 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 LARP4Q71RC2 724 aaKnown RBP eCLIP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms