RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 OR4D1Q15615 310 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 IGFL2Q6UWQ7 119 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 TMPRSS11BQ86T26 416 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 KLHDC8AQ8IYD2 350 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 ZADH2Q8N4Q0 377 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 VN1R1Q9GZP7 353 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 PELI2Q9HAT8 420 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 ZFP69BQ9UJL9 534 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 KCNE2Q9Y6J6 123 aa17.38■□□□□ 0.37
CLN3-202ENST00000355477 SPTAN1Q13813 2472 aaKnown RBP17.37■□□□□ 0.37
CLN3-202ENST00000355477 NSG1A0A0A6YYJ2 146 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 ZNF860A6NHJ4 632 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 WDR47O94967 919 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 CELA2AP08217 269 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 VARSP26640 1264 aaKnown RBP17.37■□□□□ 0.37
CLN3-202ENST00000355477 STX2P32856 288 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 AHRP35869 848 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 KCNC1P48547 511 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 SRSF1Q07955 248 aaKnown RBP eCLIP17.37■□□□□ 0.37
CLN3-202ENST00000355477 DLG1Q12959 904 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 FBXO48Q5FWF7 155 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 UBAP2Q5T6F2 1119 aaKnown RBP17.37■□□□□ 0.37
CLN3-202ENST00000355477 CMC1Q7Z7K0 106 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 GPSM1Q86YR5 675 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 KBTBD2Q8IY47 623 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 NOA1Q8NC60 698 aaKnown RBP17.37■□□□□ 0.37
CLN3-202ENST00000355477 OR5T3Q8NGG3 340 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 NT5CQ8TCD5 201 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 PSMF1Q92530 271 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 C19orf60Q96EN9 201 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 CYTH2Q99418 400 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 TMEM79Q9BSE2 394 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 ZNF700Q9H0M5 742 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 KLHL31Q9H511 634 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 SVILO95425 2214 aa17.37■□□□□ 0.37
CLN3-202ENST00000355477 PRR35P0CG20 571 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 C8orf89P0DMQ9 161 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 UQCRFS1P47985 274 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 HYAL2Q12891 473 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 HERC3Q15034 1050 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 PCOLCEQ15113 449 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 MINDY4Q4G0A6 757 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 DEFB134Q4QY38 66 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 MFSD4BQ5TF39 518 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 IRAK1BP1Q5VVH5 260 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 SLCO4C1Q6ZQN7 724 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 Q6ZS92 163 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 LANCL3Q6ZV70 420 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 CUZD1Q86UP6 607 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 ATCAYQ86WG3 371 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 MMGT1Q8N4V1 131 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 TBC1D19Q8N5T2 526 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 EFCAB3Q8N7B9 438 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 UTP15Q8TED0 518 aaKnown RBP17.36■□□□□ 0.37
CLN3-202ENST00000355477 TM9SF4Q92544 642 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 ESAMQ96AP7 390 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 AIF1LQ9BQI0 150 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 AICDAQ9GZX7 198 aa17.36■□□□□ 0.37
CLN3-202ENST00000355477 DMGDHQ9UI17 866 aaKnown RBP17.36■□□□□ 0.37
CLN3-202ENST00000355477 IGHV3-20A0A0C4DH32 117 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 PCDH17O14917 1159 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 GALR3O60755 368 aaPredicted RBP17.35■□□□□ 0.37
CLN3-202ENST00000355477 SERPINA7P05543 415 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 ZNF888P0CJ79 500 aaPredicted RBP17.35■□□□□ 0.37
CLN3-202ENST00000355477 SLC35E2BP0CK96 405 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 C1GALT1C1LP0DN25 315 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 ALOX12P18054 663 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 GNAZP19086 355 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 GNLYP22749 145 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 GGT5P36269 586 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 HNF4AP41235 474 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 ATP6V0D1P61421 351 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 OLR1P78380 273 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 RBBP5Q15291 538 aaKnown RBP17.35■□□□□ 0.37
CLN3-202ENST00000355477 CRB2Q5IJ48 1285 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 ISLR2Q6UXK2 745 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 LINC00696Q6ZRV3 163 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 CISD2Q8N5K1 135 aaKnown RBP17.35■□□□□ 0.37
CLN3-202ENST00000355477 GALNT11Q8NCW6 608 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 BRIX1Q8TDN6 353 aaKnown RBP17.35■□□□□ 0.37
CLN3-202ENST00000355477 CREB3L4Q8TEY5 395 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 KIAA1191Q96A73 305 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 SNRNP40Q96DI7 357 aaKnown RBP17.35■□□□□ 0.37
CLN3-202ENST00000355477 MRRFQ96E11 262 aaKnown RBP17.35■□□□□ 0.37
CLN3-202ENST00000355477 PEX11GQ96HA9 241 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 IMMP1LQ96LU5 166 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 RBCK1Q9BYM8 510 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 SLC6A16Q9GZN6 736 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 ILKAPQ9H0C8 392 aaPredicted RBP17.35■□□□□ 0.37
CLN3-202ENST00000355477 LANCL2Q9NS86 450 aa17.35■□□□□ 0.37
CLN3-202ENST00000355477 HMX2A2RU54 273 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 CLEC18AA5D8T8 446 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 C4orf51C9J302 202 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 CHST10O43529 356 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 PRAMEF4O60810 478 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 VPS4BO75351 444 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 HSPA7P48741 367 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 RAB8AP61006 207 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 SPTBN1Q01082 2364 aaKnown RBP17.34■□□□□ 0.37
CLN3-202ENST00000355477 RGS1Q08116 209 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms