RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 VMACQ2NL98 169 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 LHFPL3Q86UP9 236 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 TMEM86AQ8N2M4 240 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 ARMC5Q96C12 935 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 VMP1Q96GC9 406 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 GPR78Q96P69 363 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 MIOSQ9NXC5 875 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 FAM155AB1AL88 458 aaPredicted RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 UBFD1O14562 309 aaKnown RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 TBX18O95935 607 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 TGM1P22735 817 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 STC1P52823 247 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 CAV3P56539 151 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 EXOC3L2Q2M3D2 409 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 DUSP28Q4G0W2 176 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 FAM122CQ6P4D5 195 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 TMPRSS11BQ86T26 416 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 RBM23Q86U06 439 aaKnown RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 SERPINA9Q86WD7 417 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 DENND1CQ8IV53 801 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 NFKBIDQ8NI38 313 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 CSGALNACT1Q8TDX6 532 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 DNAJA4Q8WW22 397 aaPredicted RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 TMEM80Q96HE8 168 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 CNDP2Q96KP4 475 aaKnown RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 SLC6A15Q9H2J7 730 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 RNF39Q9H2S5 420 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 FLRT1Q9NZU1 646 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 PCDHA9Q9Y5H5 950 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 ALS2Q96Q42 1657 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 METTL15A6NJ78 407 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 AKR7A2O43488 359 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 SMIM11AP58511 58 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 TAS2R41P59536 307 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 ERVPABLB-1P60509 514 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 FAPQ12884 760 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 CAMK1Q14012 370 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 SCARB2Q14108 478 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 ESCO2Q56NI9 601 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 FAM209AQ5JX71 171 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 KANK2Q63ZY3 851 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 DNAJB7Q7Z6W7 309 aaPredicted RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 PLCZ1Q86YW0 608 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 TOP6BLQ8N6T0 577 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 OR10H4Q8NGA5 316 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 COL26A1Q96A83 441 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 GPN1Q9HCN4 374 aaPredicted RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 MED11Q9P086 117 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 KCNN3Q9UGI6 736 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 UTS2RQ9UKP6 389 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 PTCH2Q9Y6C5 1203 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 CATP04040 527 aaKnown RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 BCKDHAP12694 445 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 MAPKAPK2P49137 400 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 PPIGQ13427 754 aaKnown RBP eCLIP12.82□□□□□ -0.361e-8■■■■□ 22.6
COL2A1-201ENST00000337299 ATXN7L3Q14CW9 347 aaPredicted RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 TEAD4Q15561 434 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 RGMBQ6NW40 437 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 SHQ1Q6PI26 577 aaKnown RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 ZNF730Q6ZMV8 503 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 KRT78Q8N1N4 520 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 ZBTB2Q8N680 514 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 DNAJC5GQ8N7S2 189 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 BOLLQ8N9W6 283 aaKnown RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 PCSK9Q8NBP7 692 aaKnown RBP12.82□□□□□ -0.36
COL2A1-201ENST00000337299 OR9Q2Q8NGE9 314 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 SLC9A6Q92581 669 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 COQ10AQ96MF6 247 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 INPP5KQ9BT40 448 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 TSSK6Q9BXA6 273 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 OR51V1Q9H2C8 321 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 NUDT15Q9NV35 164 aa12.82□□□□□ -0.36
COL2A1-201ENST00000337299 C2orf92A0A1B0GVN3 265 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 ESR1P03372 595 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 CTBSQ01459 385 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 MTAPQ13126 283 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 POM121L1PQ3SYA9 428 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 SLC25A25Q6KCM7 469 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 SHFQ7M4L6 423 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 CDK20Q8IZL9 346 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 OR4K1Q8NGD4 311 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 SLC7A6Q92536 515 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 TRIM43Q96BQ3 446 aaPredicted RBP12.81□□□□□ -0.36
COL2A1-201ENST00000337299 DERL2Q9GZP9 239 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 CD93Q9NPY3 652 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 ST3GAL5Q9UNP4 418 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 ZFR2Q9UPR6 939 aaKnown RBP12.81□□□□□ -0.36
COL2A1-201ENST00000337299 GSRP00390 522 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 CD52P31358 61 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 ACVRL1P37023 503 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 SRSF11Q05519 484 aaKnown RBP12.81□□□□□ -0.36
COL2A1-201ENST00000337299 CLPPQ16740 277 aaPredicted RBP12.81□□□□□ -0.36
COL2A1-201ENST00000337299 COQ5Q5HYK3 327 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 OSTM1Q86WC4 334 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 CCDC36Q8IYA8 594 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 SLC22A15Q8IZD6 547 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 PELI3Q8N2H9 469 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 NEIL3Q8TAT5 605 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 PROKR1Q8TCW9 393 aa12.81□□□□□ -0.36
COL2A1-201ENST00000337299 FAM105AQ9NUU6 356 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms