RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 BCL7AQ4VC05 210 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 NAIF1Q69YI7 327 aaPredicted RBP6.62□□□□□ -1.35
SF3B1-201ENST00000335508 HIST3H2AQ7L7L0 130 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 ZNF605Q86T29 641 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 SLC22A15Q8IZD6 547 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 PGBD5Q8N414 524 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 MFSD2AQ8NA29 543 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 ZNF480Q8WV37 535 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 HIST1H2ACQ93077 130 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 RDH12Q96NR8 316 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 ACTL8Q9H568 366 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 PNPLA3Q9NST1 481 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 EGFL7Q9UHF1 273 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 TRBV5-4A0A0C4DH59 114 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 H0YIV9 168 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 TRIM24O15164 1050 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 ZNF8P17098 575 aaPredicted RBP6.62□□□□□ -1.35
SF3B1-201ENST00000335508 MYL12AP19105 171 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 ITGA1P56199 1179 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 SERTAD2Q14140 314 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 NFE2L1Q14494 772 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 GGTA1PQ4G0N0 100 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 REEP3Q6NUK4 255 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 BLOC1S3Q6QNY0 202 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 SVOPLQ8N434 492 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 TPD52L3Q96J77 140 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 CNPPD1Q9BV87 410 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 TPSD1Q9BZJ3 242 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 SMPD3Q9NY59 655 aaPredicted RBP6.62□□□□□ -1.35
SF3B1-201ENST00000335508 ADAM29Q9UKF5 820 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 IRGMA1A4Y4 181 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 FADS2P1A8MWK0 482 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 RFXAPO00287 272 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 NDUFS4O43181 175 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 MFN2O95140 757 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 IFNGP01579 166 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 HMGN1P05114 100 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 CDH1P12830 882 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 ANPEPP15144 967 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 SLC6A11P48066 632 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 TRA2BP62995 288 aaKnown RBP6.62□□□□□ -1.35
SF3B1-201ENST00000335508 BNC1Q01954 994 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 DYNC1I2Q13409 638 aaKnown RBP6.62□□□□□ -1.35
SF3B1-201ENST00000335508 PTGR1Q14914 329 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 SYT16Q17RD7 645 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 L3MBTL4Q8NA19 623 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 ZCCHC10Q8TBK6 192 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 PNPT1Q8TCS8 783 aaKnown RBP6.62□□□□□ -1.35
SF3B1-201ENST00000335508 MAGEE2Q8TD90 523 aaPredicted RBP6.62□□□□□ -1.35
SF3B1-201ENST00000335508 LMX1AQ8TE12 382 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 LGR4Q9BXB1 951 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 GPN3Q9UHW5 284 aaPredicted RBP6.62□□□□□ -1.35
SF3B1-201ENST00000335508 RARRES3Q9UL19 164 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 RNF11Q9Y3C5 154 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 PPIL1Q9Y3C6 166 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 POLR2AP24928 1970 aaKnown RBP6.62□□□□□ -1.35
SF3B1-201ENST00000335508 PEX12O00623 359 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 ALOX5P09917 674 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 CCNYL3P0C7X3 344 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 KDELR2P33947 212 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 CCT3P49368 545 aaKnown RBP6.62□□□□□ -1.35
SF3B1-201ENST00000335508 VMACQ2NL98 169 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 NAPRTQ6XQN6 538 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 GALNT12Q8IXK2 581 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 RPLP0P6Q8NHW5 317 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 ERLEC1Q96DZ1 483 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 MARK4Q96L34 752 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 SPATA9Q9BWV2 254 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 STRADBQ9C0K7 418 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 TRPV5Q9NQA5 729 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 ANKMY1Q9P2S6 941 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 NCDNQ9UBB6 729 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 P2RX2Q9UBL9 471 aa6.62□□□□□ -1.35
SF3B1-201ENST00000335508 PTBP2Q9UKA9 531 aaKnown RBP6.62□□□□□ -1.35
SF3B1-201ENST00000335508 CXCR6O00574 342 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 UGT2B17O75795 530 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 BCAS2O75934 225 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 POLR2CP19387 275 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 GSTM3P21266 225 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 FPR1P21462 350 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 ITPKBP27987 946 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 TSFMP43897 325 aaKnown RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 CDKN2DP55273 166 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 RPS7P62081 194 aaKnown RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 DUOXA1Q1HG43 343 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 KHDRBS2Q5VWX1 349 aaKnown RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 SBSNQ6UWP8 590 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 ABRAXAS1Q6UWZ7 409 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 FAM20CQ8IXL6 584 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 RASGEF1AQ8N9B8 481 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 WFDC5Q8TCV5 224 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 UBTD2Q8WUN7 234 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 CLIP3Q96DZ5 547 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 RBM4BQ9BQ04 359 aaKnown RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 RBM4Q9BWF3 364 aaKnown RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 RSPH9Q9H1X1 276 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 PIF1Q9H611 641 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 SMURF2Q9HAU4 748 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 S100A14Q9HCY8 104 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 HCN3Q9P1Z3 774 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms