RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 TRAV6A0A075B6T7 132 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 K7EPI3 171 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 AGRPO00253 132 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 HSD11B2P80365 405 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 ARSHQ5FYA8 562 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 IQCHQ86VS3 1027 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 TWNKQ96RR1 684 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 CHRAC1Q9NRG0 131 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 PCDH7O60245 1069 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 CERS1P27544 350 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 EXOC3L2Q2M3D2 409 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 CELF3Q5SZQ8 465 aaKnown RBP13.87□□□□□ -0.19
COL7A1-201ENST00000328333 DHRS1Q96LJ7 313 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 SIX4Q9UIU6 781 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 FZD4Q9ULV1 537 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 MYPNQ86TC9 1320 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 H0YGN5 161 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 GRIN3BO60391 1043 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 LGALS2P05162 132 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 MC1RQ01726 317 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 C16orf59Q7L2K0 433 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 SNX29P2Q8IUI4 249 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 ATP6V1C2Q8NEY4 427 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 ZNF436Q9C0F3 470 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-201ENST00000328333 MFSD1Q9H3U5 465 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 NANSQ9NR45 359 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 ZNF175Q9Y473 711 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 PSMD9O00233 223 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 RAB31Q13636 194 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 KIAA1161Q6NSJ0 714 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 FAM199XQ6PEV8 388 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-201ENST00000328333 ZNF550Q7Z398 422 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 FAM86B1Q8N7N1 296 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 BORCS8Q96FH0 119 aa13.87□□□□□ -0.19
COL7A1-201ENST00000328333 AGPSO00116 658 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 SCAF4O95104 1147 aaKnown RBP13.86□□□□□ -0.19
COL7A1-201ENST00000328333 SCNN1AP37088 669 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 ETV1P50549 477 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 VSX2P58304 361 aaPredicted RBP13.86□□□□□ -0.19
COL7A1-201ENST00000328333 HNRNPDQ14103 355 aaKnown RBP13.86□□□□□ -0.19
COL7A1-201ENST00000328333 PPM1JQ5JR12 505 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 COMMD7Q86VX2 200 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 XYLT1Q86Y38 959 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 C2orf15Q8WU43 125 aaKnown RBP13.86□□□□□ -0.19
COL7A1-201ENST00000328333 PEX13Q92968 403 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 HEPHQ9BQS7 1158 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 SHOXO15266 292 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 POP4O95707 220 aaKnown RBP13.86□□□□□ -0.19
COL7A1-201ENST00000328333 BCKDHAP12694 445 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 DSC3Q14574 896 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 DPYSL2Q16555 572 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 SPTA1P02549 2419 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 PHYHO14832 338 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 ANKRD23Q86SG2 305 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 SPPL2BQ8TCT7 592 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 SAGE1Q9NXZ1 904 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 NPIPA5E9PKD4 350 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 RBBP9O75884 186 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 UCHL1P09936 223 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 SLC6A6P31641 620 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 ZNF616Q08AN1 781 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 PRAMEF13Q5VWM6 474 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 FRG2Q64ET8 278 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 SLC27A4Q6P1M0 643 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 CCBE1Q6UXH8 406 aaPredicted RBP13.86□□□□□ -0.19
COL7A1-201ENST00000328333 UNQ6126/PRO20091Q6UXV3 157 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 PPTC7Q8NI37 304 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 FRG2BQ96QU4 278 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 HSD17B14Q9BPX1 270 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 FUNDC2Q9BWH2 189 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 FAIMQ9NVQ4 179 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 NPIPA1Q9UND3 350 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 VSTM5A8MXK1 200 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 KRBOX1C9JBD0 128 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 VSIG10LQ86VR7 867 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 OR2T33Q8NG76 320 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 HEBP1Q9NRV9 189 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 NPAP1Q9NZP6 1156 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 HTRA2O43464 458 aaPredicted RBP13.86□□□□□ -0.19
COL7A1-201ENST00000328333 NT5EP21589 574 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 CLEC12AQ5QGZ9 265 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 TSTD2Q5T7W7 516 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 COQ10AQ96MF6 247 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 EIF2B4Q9UI10 523 aaKnown RBP13.86□□□□□ -0.19
COL7A1-201ENST00000328333 OR6C6A6NF89 314 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 AIPO00170 330 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 MAGEA3P43357 314 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 HSPA7P48741 367 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 KCNC3Q14003 757 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 TBL1XR1Q9BZK7 514 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 TM6SF2Q9BZW4 377 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 RAB9BQ9NP90 201 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 MAP10Q9P2G4 905 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 XRCC1P18887 633 aaPredicted RBP13.86□□□□□ -0.19
COL7A1-201ENST00000328333 SHMT1P34896 483 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 TRAM2Q15035 370 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 PGLYRP2Q96PD5 576 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 MTERF1Q99551 399 aaKnown RBP13.86□□□□□ -0.19
COL7A1-201ENST00000328333 BTBD2Q9BX70 525 aa13.86□□□□□ -0.19
COL7A1-201ENST00000328333 XPNPEP1Q9NQW7 623 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms