RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 BTBD9Q96Q07 612 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 OCR1Q9BZK8 76 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 CLIP2Q9UDT6 1046 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 MAGED1Q9Y5V3 778 aaPredicted RBP3.06□□□□□ -1.92
CD44-239ENST00000639002 TCRBV21S2A2A0A5A6 115 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 ANKRD18BA2A2Z9 1011 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 F8VVB4 439 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 F8VWA3 439 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 K7EQG2 157 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 OGTO15294 1046 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 AP5Z1O43299 807 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 RPS6KA5O75582 802 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 SERPING1P05155 500 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 CETN2P41208 172 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 GSK3BP49841 420 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 LIMK1P53667 647 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 ABCE1P61221 599 aaKnown RBP3.05□□□□□ -1.92
CD44-239ENST00000639002 UPP1Q16831 310 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 ATP1A1-AS1Q5TC04 95 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 FHL5Q5TD97 284 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 ANKRD33Q7Z3H0 272 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 C11orf42Q8N5U0 333 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 CD177Q8N6Q3 437 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 TSACCQ96A04 125 aaPredicted RBP3.05□□□□□ -1.92
CD44-239ENST00000639002 SDCBP2Q9H190 292 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 PIH1D3Q9NQM4 214 aaKnown RBP3.05□□□□□ -1.92
CD44-239ENST00000639002 PRO0461Q9UI25 63 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 PILRBQ9UKJ0 227 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 PILRAQ9UKJ1 303 aa3.05□□□□□ -1.92
CD44-239ENST00000639002 HEG1Q9ULI3 1381 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 UMODL1Q5DID0 1318 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 EDDM13A0A1B0GTR0 161 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 RPL37AP8A6NKH3 93 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 MAGEB2O15479 319 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 CELF2O95319 508 aaKnown RBP3.04□□□□□ -1.92
CD44-239ENST00000639002 THY1P04216 161 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 ABCB1P08183 1280 aaPredicted RBP3.04□□□□□ -1.92
CD44-239ENST00000639002 LMO2P25791 158 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 PCGF2P35227 344 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 CLNS1AP54105 237 aaKnown RBP3.04□□□□□ -1.92
CD44-239ENST00000639002 EIF5P55010 431 aaKnown RBP3.04□□□□□ -1.92
CD44-239ENST00000639002 AGAP7PQ5VUJ5 663 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 CENPVQ7Z7K6 275 aaPredicted RBP3.04□□□□□ -1.92
CD44-239ENST00000639002 CARM1Q86X55 608 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 SLC4A11Q8NBS3 891 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 RHOXF1Q8NHV9 184 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 RPLP0P6Q8NHW5 317 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 NXPE2Q96DL1 559 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 LRRC3BQ96PB8 259 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 NAP1L4Q99733 375 aaKnown RBP3.04□□□□□ -1.92
CD44-239ENST00000639002 UBAC1Q9BSL1 405 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 TBC1D7Q9P0N9 293 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 CPSF2Q9P2I0 782 aaKnown RBP3.04□□□□□ -1.92
CD44-239ENST00000639002 TXNDC16Q9P2K2 825 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 FBXL4Q9UKA2 621 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 POMT2Q9UKY4 750 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 PLCL2Q9UPR0 1127 aa3.04□□□□□ -1.92
CD44-239ENST00000639002 ZNF256Q9Y2P7 627 aaPredicted RBP3.04□□□□□ -1.92
CD44-239ENST00000639002 IL16Q14005 1332 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 IGHV3-16A0A0C4DH30 117 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 CLDN4O14493 209 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 PSMD10O75832 226 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 VENTXO95231 258 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 ACSM1Q08AH1 577 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 ITPK1Q13572 414 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 SNTB1Q13884 538 aaKnown RBP3.03□□□□□ -1.92
CD44-239ENST00000639002 LETM2Q2VYF4 491 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 LACTB2Q53H82 288 aaPredicted RBP3.03□□□□□ -1.92
CD44-239ENST00000639002 BMP2KLQ5H9B9 411 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 LEMD1Q68G75 181 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 Q6ZVH6 145 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 DET1Q7L5Y6 550 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 C5orf24Q7Z6I8 188 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 CATSPER3Q86XQ3 398 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 MRAPQ8TCY5 172 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 AGAP11Q8TF27 550 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 SECISBP2LQ93073 1101 aaKnown RBP3.03□□□□□ -1.92
CD44-239ENST00000639002 TAAR6Q96RI8 345 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 IL36AQ9UHA7 158 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 SNX8Q9Y5X2 465 aa3.03□□□□□ -1.92
CD44-239ENST00000639002 NPHP3Q7Z494 1330 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 C17orf105B2RV13 164 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 ZNF749O43361 778 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 AHCYL1O43865 530 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 TADA2AO75478 443 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 GFPT2O94808 682 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 RPLP0P05388 317 aaKnown RBP3.02□□□□□ -1.93
CD44-239ENST00000639002 OR52Z1P0C646 297 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 C4BPBP20851 252 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 PKLRP30613 574 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 GPR183P32249 361 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 RBPJQ06330 500 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 ILF2Q12905 390 aaKnown RBP3.02□□□□□ -1.93
CD44-239ENST00000639002 ALCAMQ13740 583 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 PTGISQ16647 500 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 RPAINQ86UA6 219 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 CCDC60Q8IWA6 550 aaPredicted RBP3.02□□□□□ -1.93
CD44-239ENST00000639002 MAML2Q8IZL2 1156 aaPredicted RBP3.02□□□□□ -1.93
CD44-239ENST00000639002 RYBPQ8N488 228 aaPredicted RBP3.02□□□□□ -1.93
CD44-239ENST00000639002 AVL9Q8NBF6 648 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms