RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 NR1D2Q14995 579 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 FASTKD3Q14CZ7 662 aaKnown RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 PDK2Q15119 407 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 SLC18A3Q16572 532 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 CA9Q16790 459 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 CDO1Q16878 200 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 FHOD3Q2V2M9 1422 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ANKRD55Q3KP44 614 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ZSCAN23Q3MJ62 389 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 UGT3A2Q3SY77 523 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 AMZ1Q400G9 498 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 CCDC58Q4VC31 144 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 YIF1BQ5BJH7 314 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 TCHHL1Q5QJ38 904 aaPredicted RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 TTC38Q5R3I4 469 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 BSPRYQ5W0U4 402 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ANKS6Q68DC2 871 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 DUPD1Q68J44 220 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 NADSYN1Q6IA69 706 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 FAM109BQ6ICB4 259 aaPredicted RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 PRMT9Q6P2P2 845 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 TMEM81Q6P7N7 255 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 TRMT10BQ6PF06 316 aaKnown RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 WASH2PQ6VEQ5 465 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 SYT10Q6XYQ8 523 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 CFAP77Q6ZQR2 320 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 GAREM2Q75VX8 874 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 GPRIN1Q7Z2K8 1008 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 TECPR1Q7Z6L1 1165 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 PIGWQ7Z7B1 504 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 TRABD2AQ86V40 505 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 PAQR7Q86WK9 346 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ZFAND4Q86XD8 727 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 SLC13A5Q86YT5 568 aaPredicted RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 RBM45Q8IUH3 476 aaKnown RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 PLD3Q8IV08 490 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 APLFQ8IW19 511 aaPredicted RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 FAM219AQ8IW50 185 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 LRRC75A-AS1Q8N1F1 130 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 THEM5Q8N1Q8 247 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 NATD1Q8N6N6 113 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 SIRT6Q8N6T7 355 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 FAM71CQ8NEG0 241 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ZNF397Q8NF99 534 aaPredicted RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 OR10H4Q8NGA5 316 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 OR13C9Q8NGT0 318 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 FAM110DQ8TAY7 271 aaPredicted RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 TBC1D15Q8TC07 691 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 SLC2A12Q8TD20 617 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 BPIFB1Q8TDL5 484 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 GRHL3Q8TE85 626 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 DQX1Q8TE96 717 aaKnown RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 NTN5Q8WTR8 489 aaPredicted RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 NSMCE1Q8WV22 266 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 IFT81Q8WYA0 676 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ESR2Q92731 530 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 PROX1Q92786 737 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 SLCO2A1Q92959 643 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 CD101Q93033 1021 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 RFT1Q96AA3 541 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ESAMQ96AP7 390 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 CCDC127Q96BQ5 260 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 FOXRED1Q96CU9 486 aaPredicted RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 AP2M1Q96CW1 435 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ARHGEF26Q96DR7 871 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 MMABQ96EY8 250 aaPredicted RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 MCRS1Q96EZ8 462 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ZNF274Q96GC6 653 aaPredicted RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 BOD1Q96IK1 185 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 PHACTR3Q96KR7 559 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 C4orf36Q96KX1 117 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 LRR1Q96L50 414 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 CLIC6Q96NY7 704 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 TEFMQ96QE5 360 aaKnown RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 OR2A14Q96R47 310 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 KRT12Q99456 494 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 NPAS2Q99743 824 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 DHRS9Q9BPW9 319 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 CLSTN3Q9BQT9 956 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.89□□□□□ -1.95
VIM-210ENST00000637053 ABHD6Q9BV23 337 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 SPATA5L1Q9BVQ7 753 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 PAPOLGQ9BWT3 736 aaKnown RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 TRIM15Q9C019 465 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ROGDIQ9GZN7 287 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 RAB1BQ9H0U4 201 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 KCNN2Q9H2S1 579 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 TMEM231Q9H6L2 316 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 MANSC1Q9H8J5 431 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ANKZF1Q9H8Y5 726 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 COG4Q9H9E3 785 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 AGO3Q9H9G7 860 aaKnown RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 MEAF6Q9HAF1 191 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 LRRC4Q9HBW1 653 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 ZNF160Q9HCG1 818 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 APMAPQ9HDC9 416 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 DIABLOQ9NR28 239 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 PDGFCQ9NRA1 345 aa2.89□□□□□ -1.95
VIM-210ENST00000637053 FAM207AQ9NSI2 230 aaPredicted RBP2.89□□□□□ -1.95
VIM-210ENST00000637053 C19orf12Q9NSK7 152 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms