RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PLD1Q13393 1074 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 VEZF1Q14119 521 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CLCA4Q14CN2 919 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CPSF6Q16630 551 aaKnown RBP eCLIP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 HIST2H2ACQ16777 129 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 VMACQ2NL98 169 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 LRRK1Q38SD2 2015 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF404Q494X3 552 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 RFTN2Q52LD8 501 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ARMCX4Q5H9R4 360 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 FAM26DQ5JW98 314 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 LDLRAP1Q5SW96 308 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SYT6Q5T7P8 510 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 HIST2H2AA3Q6FI13 130 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CCSAPQ6IQ19 270 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 DUS1LQ6P1R4 473 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 DOK6Q6PKX4 331 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ANGPTL8Q6UXH0 198 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 UBE2R2Q712K3 238 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 EIF3MQ7L2H7 374 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 GALNT5Q7Z7M9 940 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SLC44A2Q8IWA5 706 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 RGL4Q8IZJ4 473 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SLC34A3Q8N130 599 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CBARPQ8N350 705 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 LINC00469Q8N7U9 141 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 BEND7Q8N7W2 519 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 DCBLD1Q8N8Z6 715 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 POC5Q8NA72 575 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 DCAF4L2Q8NA75 395 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ZSCAN1Q8NBB4 408 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 PSMA8Q8TAA3 256 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 HPS1Q92902 700 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CLP1Q92989 425 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ESAMQ96AP7 390 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TEX37Q96LM6 180 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TSSK3Q96PN8 268 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ALPK1Q96QP1 1244 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 MBOAT4Q96T53 435 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 PSD2Q9BQI7 771 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 COPS4Q9BT78 406 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TTLL2Q9BWV7 592 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TRIM8Q9BZR9 551 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 C6orf62Q9GZU0 229 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 DCSTAMPQ9H295 470 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 IGFLR1Q9H665 355 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 NTN4Q9HB63 628 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF282Q9UDV7 671 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 MKLN1Q9UL63 735 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CFL2Q9Y281 166 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 POFUT2Q9Y2G5 429 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SLC27A5Q9Y2P5 690 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 COL4A3Q01955 1670 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 VCANP13611 3396 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 MUC6Q6W4X9 2439 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 A0A0D9SEW6 157 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TMEM238LA0A1B0GVL6 79 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CLIC1O00299 241 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 OR7A17O14581 309 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 MUSKO15146 869 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 AXIN1O15169 862 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TSPAN3O60637 253 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 UGDHO60701 494 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TBL1XO60907 577 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 KRT75O95678 551 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TSPAN12O95859 305 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CATP04040 527 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 FUCA1P04066 466 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF806P0C7X5 589 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CYP2A6P11509 494 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 POLR2EP19388 210 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ENDOUP21128 410 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ACRV1P26436 265 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 FMO3P31513 532 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 UGT2B10P36537 528 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SNRPD1P62314 119 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 POLR2LP62875 67 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 HMGCS1Q01581 520 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CSTF1Q05048 431 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 DSC1Q08554 894 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 COX10Q12887 443 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 NFATC2Q13469 925 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ELOAQ14241 798 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 PTGR1Q14914 329 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SPCS2Q15005 226 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 MAPK11Q15759 364 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 USP39Q53GS9 565 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CPZQ66K79 652 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 GTF2IRD2BQ6EKJ0 949 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 XAF1Q6GPH4 301 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CAPN13Q6MZZ7 669 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 FUT10Q6P4F1 479 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TBPL2Q6SJ96 375 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF598Q86UK7 904 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 GTF2IRD2Q86UP8 949 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CYP4Z1Q86W10 505 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 PIANPQ8IYJ0 282 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 MDGA1Q8NFP4 955 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SPPL2AQ8TCT8 520 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TANKQ92844 425 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms