RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 RXRGP48443 463 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 ARRB1P49407 418 aaPredicted RBP19.24■□□□□ 0.67
CLN3-250ENST00000636839 MNAT1P51948 309 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 SNRPNP63162 240 aaKnown RBP19.24■□□□□ 0.67
CLN3-250ENST00000636839 BIRC2Q13490 618 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 RCAN2Q14206 197 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 ZIC1Q15915 447 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 MMEL1Q495T6 779 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 C14orf28Q4W4Y0 310 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 NKAIN2Q5VXU1 208 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 SLC35F3Q8IY50 421 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 DEFB107AQ8IZN7 70 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 SLC38A3Q99624 504 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 SLC39A3Q9BRY0 314 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 THTPAQ9BU02 230 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 MS4A8Q9BY19 250 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 NT5DC2Q9H857 520 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 IL1RL2Q9HB29 575 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 SUSD2Q9UGT4 822 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 SNX7Q9UNH6 387 aa19.24■□□□□ 0.67
CLN3-250ENST00000636839 ADAMTS9Q9P2N4 1935 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 A0A0G2JN53 185 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 SH3BP5O60239 455 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 CCNDBP1O95273 360 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 B3GALT4O96024 378 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 PTX3P26022 381 aaPredicted RBP19.23■□□□□ 0.67
CLN3-250ENST00000636839 DPP6P42658 865 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 PLIN5Q00G26 463 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 PAGE3Q5JUK9 113 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 DPY30Q9C005 99 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 C1orf21Q9H246 121 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 EFCAB1Q9HAE3 211 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 SLAMF8Q9P0V8 285 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 PPT2Q9UMR5 302 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 TMED5Q9Y3A6 229 aa19.23■□□□□ 0.67
CLN3-250ENST00000636839 ARHGAP10A1A4S6 786 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 FAM234BA2RU67 622 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 A8MUI8 341 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 C4orf51C9J302 202 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 PLPP1O14494 284 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 ZW10O43264 779 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 KLK1P06870 262 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 ANXA4P09525 319 aaPredicted RBP19.22■□□□□ 0.67
CLN3-250ENST00000636839 JAK1P23458 1154 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 ALDH4A1P30038 563 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 HYAL2Q12891 473 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 STX5Q13190 355 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 MAPRE2Q15555 327 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 C6orf132Q5T0Z8 1188 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 DEPDC1Q5TB30 811 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 KHDRBS2Q5VWX1 349 aaKnown RBP19.22■□□□□ 0.67
CLN3-250ENST00000636839 PEAR1Q5VY43 1037 aaPredicted RBP19.22■□□□□ 0.67
CLN3-250ENST00000636839 FIGLAQ6QHK4 219 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 UBE3DQ7Z6J8 389 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 OOSP2Q86WS3 158 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 HOMEZQ8IX15 550 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 RBM12BQ8IXT5 1001 aaKnown RBP19.22■□□□□ 0.67
CLN3-250ENST00000636839 AMER3Q8N944 861 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 SERPINI1Q99574 410 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 ZNF717Q9BY31 904 aaPredicted RBP19.22■□□□□ 0.67
CLN3-250ENST00000636839 ABCG4Q9H172 646 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 LHX9Q9NQ69 397 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 MRGBPQ9NV56 204 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 LRIT1Q9P2V4 623 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 RUVBL1Q9Y265 456 aaKnown RBP19.22■□□□□ 0.67
CLN3-250ENST00000636839 PCDHGA4Q9Y5G9 962 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 OR2A25A4D2G3 310 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 TRIM38O00635 465 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 MRASO14807 208 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 CFLARO15519 480 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 HCRTR1O43613 425 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 KIF1CO43896 1103 aaKnown RBP19.22■□□□□ 0.67
CLN3-250ENST00000636839 EEDO75530 441 aaKnown RBP19.22■□□□□ 0.67
CLN3-250ENST00000636839 EPHA8P29322 1005 aaPredicted RBP19.22■□□□□ 0.67
CLN3-250ENST00000636839 GRK3P35626 688 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 KCNK10P57789 538 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 PHC1P78364 1004 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 ART3Q13508 389 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 TLR1Q15399 786 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 ZNF528Q3MIS6 628 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 FAM174BQ3ZCQ3 159 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 SPANXN4Q5MJ08 99 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 ANKRD26P1Q6NSI1 321 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 SLC2A7Q6PXP3 512 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 KANSL1Q7Z3B3 1105 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 METTL4Q8N3J2 472 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 SDR16C5Q8N3Y7 309 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 TMEM74Q96NL1 305 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 GAREM1Q9H706 876 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 R4GN57 208 aa19.22■□□□□ 0.67
CLN3-250ENST00000636839 MDC1Q14676 2089 aaKnown RBP19.21■□□□□ 0.67
CLN3-250ENST00000636839 A0A0J9YVX5 310 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 A0A1B0GTQ1 180 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 FAM221BA6H8Z2 402 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 CCDC154A6NI56 674 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 TNFSF14O43557 240 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 PCDH7O60245 1069 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 PRPS2P11908 318 aa19.21■□□□□ 0.67
CLN3-250ENST00000636839 TIA1P31483 386 aaKnown RBP eCLIP19.21■□□□□ 0.67
CLN3-250ENST00000636839 PGM1P36871 562 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms