RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 IFI30P13284 250 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 CSRP3P50461 194 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 ACVR1Q04771 509 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 RING1Q06587 406 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 LRRC66Q68CR7 880 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 CCDC115Q96NT0 180 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 SP140LQ9H930 580 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 AKIP1Q9NQ31 210 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 TRIM64CA6NLI5 447 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 H3BM21 787 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 TAPBPO15533 448 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 PLOD3O60568 738 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 RPLP2P05387 115 aaKnown RBP12.18□□□□□ -0.46
LIG1-221ENST00000613670 BPIP17213 487 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 EPHB3P54753 998 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 UGT2B15P54855 530 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 TEAD4Q15561 434 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 LYSMD2Q8IV50 215 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 NAGSQ8N159 534 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 DBF4BQ8NFT6 615 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 SCAMP4Q969E2 229 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 FAM129BQ96TA1 746 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 YME1L1Q96TA2 773 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 CENPOQ9BU64 300 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 HTATIP2Q9BUP3 242 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 EMILIN2Q9BXX0 1053 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 TAS2R9Q9NYW1 312 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 ATP6V1HQ9UI12 483 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 SLC25A13Q9UJS0 675 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 POFUT2Q9Y2G5 429 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 OR6C70A6NIJ9 312 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 CASKO14936 926 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 PRLP01236 227 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 PRR35P0CG20 571 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 CA5AP35218 305 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 ASMTP46597 345 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 SGSHP51688 502 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 GPR17Q13304 367 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 KEAP1Q14145 624 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 TXNDC8Q6A555 127 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 NPAS3Q8IXF0 933 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 C7orf57Q8NEG2 295 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 CCM2Q9BSQ5 444 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 ZDHHC3Q9NYG2 299 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 KNL1Q8NG31 2342 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 TRBC2A0A5B9 178 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 PIPSLA2A3N6 862 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 CLCA1A8K7I4 914 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 SMAD6O43541 496 aaKnown RBP12.17□□□□□ -0.46
LIG1-221ENST00000613670 STC2O76061 302 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 CDRT1O95170 752 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 OAZ2O95190 189 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 C6orf47O95873 294 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 ITGAMP11215 1152 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 PRKAR2AP13861 404 aaKnown RBP12.17□□□□□ -0.46
LIG1-221ENST00000613670 RTP2Q5QGT7 225 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 CACTIN-AS1Q8N1I8 211 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 DYNC2LI1Q8TCX1 351 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 XAGE5Q8WWM1 108 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 ART5Q96L15 291 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 OR51B5Q9H339 312 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 RIMKLBQ9ULI2 386 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 NEU3Q9UQ49 428 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 MED16Q9Y2X0 877 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 C2orf78A6NCI8 922 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 KPNA3O00505 521 aaPredicted RBP12.17□□□□□ -0.46
LIG1-221ENST00000613670 JRKO75564 520 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 NR2F6P10588 404 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 PREPP48147 710 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 IFITM3Q01628 133 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 MEF2AQ02078 507 aaPredicted RBP12.17□□□□□ -0.46
LIG1-221ENST00000613670 SELENBP1Q13228 472 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 FAM214AQ32MH5 1076 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 GPR33Q49SQ1 333 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 ATP13A5Q4VNC0 1218 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 LDLRAD1Q5T700 205 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 SYT6Q5T7P8 510 aaPredicted RBP12.17□□□□□ -0.46
LIG1-221ENST00000613670 IER5LQ5T953 404 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 SYCE2Q6PIF2 218 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 TEX12Q9BXU0 123 aa12.17□□□□□ -0.46
LIG1-221ENST00000613670 MRPS7Q9Y2R9 242 aaKnown RBP12.17□□□□□ -0.46
LIG1-221ENST00000613670 SPIN1Q9Y657 262 aaPredicted RBP12.17□□□□□ -0.46
LIG1-221ENST00000613670 ALDH1A1P00352 501 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 C8GP07360 202 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 INHBBP09529 407 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 ACRV1P26436 265 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 CDK6Q00534 326 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 C5orf22Q49AR2 442 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 FBXO43Q4G163 708 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 BCL7AQ4VC05 210 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 NCEH1Q6PIU2 408 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 MRPL10Q7Z7H8 261 aaKnown RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 HMGN2P46Q86SG4 172 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 CACUL1Q86Y37 369 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 ASCC1Q8N9N2 400 aaKnown RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 VMP1Q96GC9 406 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 DOHHQ9BU89 302 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 FAM120CQ9NX05 1096 aaKnown RBP12.16□□□□□ -0.46
LIG1-221ENST00000613670 CFAP97Q9P2B7 532 aa12.16□□□□□ -0.46
LIG1-221ENST00000613670 PRKAB1Q9Y478 270 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 287.2 ms