RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 CCDC77Q9BR77 488 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 EPB41L4BQ9H329 900 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 GEMIN8Q9NWZ8 242 aaKnown RBP16.02■□□□□ 0.16
TRIM28-215ENST00000601150 ZNF282Q9UDV7 671 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-215ENST00000601150 FETUBQ9UGM5 382 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 ZFP69BQ9UJL9 534 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 MRPS2Q9Y399 296 aaKnown RBP16.02■□□□□ 0.16
TRIM28-215ENST00000601150 SCN3AQ9NY46 2000 aa16.02■□□□□ 0.15
TRIM28-215ENST00000601150 PIEZO2Q9H5I5 2752 aa16.02■□□□□ 0.15
TRIM28-215ENST00000601150 VSTM2BA6NLU5 285 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 CLGNO14967 610 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 CCNT2O60583 730 aaKnown RBP16.01■□□□□ 0.15
TRIM28-215ENST00000601150 UMODP07911 640 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 COL6A2P12110 1019 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 MTHFD2P13995 350 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 CXCR2P25025 360 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 FOXL2P58012 376 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 PWP1Q13610 501 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 TSNAXIP1Q2TAA8 658 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 ATG9BQ674R7 924 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 CNPY4Q8N129 248 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 PLD6Q8N2A8 252 aaKnown RBP16.01■□□□□ 0.15
TRIM28-215ENST00000601150 AMER3Q8N944 861 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 KCT2Q8NC54 265 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 STT3BQ8TCJ2 826 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 UBTD2Q8WUN7 234 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 MTBPQ96DY7 904 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 SPSB2Q99619 263 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 EHD1Q9H4M9 534 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 TRPC4Q9UBN4 977 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 TUBD1Q9UJT1 453 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 PCSK5Q92824 1860 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 ATRXP46100 2492 aa16.01■□□□□ 0.15
TRIM28-215ENST00000601150 IGLV3-12A0A075B6K2 115 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 ARGFXA6NJG6 315 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 H0YIG0 161 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 MAP2K7O14733 419 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 NDUFS4O43181 175 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 RFPL1O75677 317 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 NSA2O95478 260 aaKnown RBP16■□□□□ 0.15
TRIM28-215ENST00000601150 SERPIND1P05546 499 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 GFAPP14136 432 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 VARSP26640 1264 aaKnown RBP16■□□□□ 0.15
TRIM28-215ENST00000601150 AGTR2P50052 363 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 RGS1Q08116 209 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 ATP1A4Q13733 1029 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 RBBP5Q15291 538 aaKnown RBP16■□□□□ 0.15
TRIM28-215ENST00000601150 TECRLQ5HYJ1 363 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 MRGPREQ86SM8 312 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 ANKRD53Q8N9V6 530 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 TRPV3Q8NET8 790 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 OR9A4Q8NGU2 314 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 ZCCHC10Q8TBK6 192 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 NT5CQ8TCD5 201 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 UBLCP1Q8WVY7 318 aaPredicted RBP16■□□□□ 0.15
TRIM28-215ENST00000601150 NACC2Q96BF6 587 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 MIEF2Q96C03 454 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 MOCOSQ96EN8 888 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 YIPF2Q9BWQ6 316 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 SEMA4CQ9C0C4 833 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 PITHD1Q9GZP4 211 aaPredicted RBP16■□□□□ 0.15
TRIM28-215ENST00000601150 SOX17Q9H6I2 414 aaPredicted RBP16■□□□□ 0.15
TRIM28-215ENST00000601150 ANKHQ9HCJ1 492 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 MKKSQ9NPJ1 570 aaPredicted RBP16■□□□□ 0.15
TRIM28-215ENST00000601150 OPTCQ9UBM4 332 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 SLC22A7Q9Y694 548 aa16■□□□□ 0.15
TRIM28-215ENST00000601150 IQANK1A0A1B0GTG1 560 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 K7EPI3 171 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 PEX12O00623 359 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 IGHEP01854 428 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 PRB1P04280 392 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 RBP1P09455 135 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 ZGLP1P0C6A0 271 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 IL1RNP18510 177 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 MMP11P24347 488 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 ALDH18A1P54886 795 aaKnown RBP15.99■□□□□ 0.15
TRIM28-215ENST00000601150 RRADP55042 308 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 SNRPNP63162 240 aaKnown RBP15.99■□□□□ 0.15
TRIM28-215ENST00000601150 SLBPQ14493 270 aaKnown RBP eCLIP15.99■□□□□ 0.15
TRIM28-215ENST00000601150 SETDB1Q15047 1291 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 XKR6Q5GH73 641 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 CPZQ66K79 652 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 TMIGD1Q6UXZ0 262 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 TIFABQ6ZNK6 161 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 SHISA6Q6ZSJ9 500 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 MED25Q71SY5 747 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 PRSS41Q7RTY9 318 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 PPP1R32Q7Z5V6 425 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 TMEM151BQ8IW70 566 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 KRT78Q8N1N4 520 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 TMEM102Q8N9M5 508 aaPredicted RBP15.99■□□□□ 0.15
TRIM28-215ENST00000601150 TTLQ8NG68 377 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 WDR34Q96EX3 536 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 SCYL1Q96KG9 808 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 CRB3Q9BUF7 120 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 ING2Q9H160 280 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 NT5DC2Q9H857 520 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 ACSS2Q9NR19 701 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 SEMA3GQ9NS98 782 aa15.99■□□□□ 0.15
TRIM28-215ENST00000601150 C14orf105Q9NVL8 296 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms