RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 RPRD1BQ9NQG5 326 aaKnown RBP17.71■□□□□ 0.43
UPF1-210ENST00000600689 CCDC177Q9NQR7 707 aaPredicted RBP17.71■□□□□ 0.43
UPF1-210ENST00000600689 DRGXA6NNA5 263 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 INPPL1O15357 1258 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 SUV39H1O43463 412 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 RPIAP49247 311 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 PRKCDQ05655 676 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 KLHL17Q6TDP4 642 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 SREK1IP1Q8N9Q2 155 aaPredicted RBP17.71■□□□□ 0.43
UPF1-210ENST00000600689 GPR156Q8NFN8 814 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 ST6GAL2Q96JF0 529 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 TMEM121BQ9BXQ6 578 aaPredicted RBP17.71■□□□□ 0.43
UPF1-210ENST00000600689 FZD4Q9ULV1 537 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 HSPE1-MOB4S4R3N1 261 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 GBAP04062 536 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 LAMP1P11279 417 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 UGT2B10P36537 528 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 CRATP43155 626 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 TSTA3Q13630 321 aaPredicted RBP17.7■□□□□ 0.42
UPF1-210ENST00000600689 TBCEQ15813 527 aaPredicted RBP17.7■□□□□ 0.42
UPF1-210ENST00000600689 Q5BKY6 102 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 FAM180BQ6P0A1 224 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 TUBA3EQ6PEY2 450 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 PAMR1Q6UXH9 720 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 CAMKK1Q8N5S9 505 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 HRASLS5Q96KN8 279 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 P2RY12Q9H244 342 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 ABCB9Q9NP78 766 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 SLC22A14Q9Y267 594 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 TET1Q8NFU7 2136 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 MEN1O00255 615 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 RGS13O14921 159 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 GJB5O95377 273 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 CLDN7O95471 211 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 CLPPQ16740 277 aaPredicted RBP17.7■□□□□ 0.42
UPF1-210ENST00000600689 LRRC73Q5JTD7 316 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 LRIF1Q5T3J3 769 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 BCDIN3DQ7Z5W3 292 aaKnown RBP17.7■□□□□ 0.42
UPF1-210ENST00000600689 GLCCI1Q86VQ1 547 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 TMEM173Q86WV6 379 aaPredicted RBP17.7■□□□□ 0.42
UPF1-210ENST00000600689 ZSWIM9Q86XI8 627 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 ZBTB2Q8N680 514 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 CD99L2Q8TCZ2 262 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 TPT1P8Q9HAU6 139 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 ABCB8Q9NUT2 735 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 SH3BP4Q9P0V3 963 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 FNIP2Q9P278 1114 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 MALT1Q9UDY8 824 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 PCDHB5Q9Y5E4 795 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 DOCK4Q8N1I0 1966 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 DGKAP23743 735 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 UBE3AQ05086 875 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 CACNG1Q06432 222 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 PPIGQ13427 754 aaKnown RBP eCLIP17.7■□□□□ 0.426e-10■□□□□ 11.2
UPF1-210ENST00000600689 ADNP2Q6IQ32 1131 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 RFPL4BQ6ZWI9 263 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 FAM124AQ86V42 546 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 NLRP8Q86W28 1048 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 PLPP6Q8IY26 295 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 LGI4Q8N135 537 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 OR7G1Q8NGA0 311 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 COQ8BQ96D53 544 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 OR2A14Q96R47 310 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 GABARAPL1Q9H0R8 117 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 C11orf16Q9NQ32 467 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 ZNF226Q9NYT6 803 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 MOSPD1Q9UJG1 213 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 OARD1Q9Y530 152 aa17.7■□□□□ 0.42
UPF1-210ENST00000600689 A0A1W2PQ09 198 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 A0A1W2PQ45 241 aaPredicted RBP17.69■□□□□ 0.42
UPF1-210ENST00000600689 A0A1W2PQY0 241 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 MEIOCA2RUB1 952 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 ARHGAP33O14559 1287 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 GPX5O75715 221 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 DUSP4Q13115 394 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 E2F2Q14209 437 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 CDK10Q15131 360 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 EXOC3L2Q2M3D2 409 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 EIF3MQ7L2H7 374 aaKnown RBP17.69■□□□□ 0.42
UPF1-210ENST00000600689 TRIM46Q7Z4K8 759 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 REM2Q8IYK8 340 aaPredicted RBP17.69■□□□□ 0.42
UPF1-210ENST00000600689 FCGR1BQ92637 280 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 ASPNQ9BXN1 380 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.69■□□□□ 0.42
UPF1-210ENST00000600689 TNFRSF10AO00220 468 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 EBLN1P0CF75 366 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 GGT2P36268 569 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 RPS19P39019 145 aaKnown RBP17.69■□□□□ 0.42
UPF1-210ENST00000600689 MAPKAPK2P49137 400 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 ZNF177Q13360 481 aaPredicted RBP17.69■□□□□ 0.42
UPF1-210ENST00000600689 BOP1Q14137 746 aaKnown RBP17.69■□□□□ 0.42
UPF1-210ENST00000600689 STARD3Q14849 445 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 NFE2Q16621 373 aaPredicted RBP17.69■□□□□ 0.42
UPF1-210ENST00000600689 NOXRED1Q6NXP6 359 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 C11orf74Q86VG3 221 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 DBF4BQ8NFT6 615 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 COL21A1Q96P44 957 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 IL17CQ9P0M4 197 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 ERVW-1Q9UQF0 538 aa17.69■□□□□ 0.42
UPF1-210ENST00000600689 PCDH7O60245 1069 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms