RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 KLHL1Q9NR64 748 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 TAS2R13Q9NYV9 303 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 SEC14L3Q9UDX4 400 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 C19orf25Q9UFG5 118 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 ASIC3Q9UHC3 531 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 JRKLQ9Y4A0 524 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 CCL21O00585 134 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 CRYABP02511 175 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 C8GP07360 202 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 HIST1H2AGP0C0S8 130 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 PGAM1P18669 254 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 HIST1H2ADP20671 130 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 TDGF1P3P51864 188 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 CDKN2DP55273 166 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 NAA30Q147X3 362 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 BBS9Q3SYG4 887 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 ZNF766Q5HY98 468 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 ZNF324BQ6AW86 544 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 CAPN13Q6MZZ7 669 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 TMEM214Q6NUQ4 689 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 ANKRD37Q7Z713 158 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 BEST3Q8N1M1 668 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 GRK7Q8WTQ7 553 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 PYCR2Q96C36 320 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 HIST1H2AHQ96KK5 128 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 HIST1H2AJQ99878 128 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 H2AFJQ9BTM1 129 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 SLC17A6Q9P2U8 582 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 SUCOQ9UBS9 1254 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 NAALAD2Q9Y3Q0 740 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 NEU2Q9Y3R4 380 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 CPAMD8Q8IZJ3 1885 aa16.6■□□□□ 0.25
SHKBP1-223ENST00000600552 GOLGA6L10A0A0M3HER8 536 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 A0A1W2PQ72 361 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 ENO4A6NNW6 628 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 OR1F1O43749 312 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 B3GALT4O96024 378 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 OLR1P78380 273 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 TIAL1Q01085 375 aaKnown RBP eCLIP16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 DHX9Q08211 1270 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 CRYMQ14894 314 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 PHKG1Q16816 387 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 SFT2D3Q587I9 215 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 ACER2Q5QJU3 275 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 PDSS2Q86YH6 399 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 CYP4X1Q8N118 509 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 GPATCH11Q8N954 259 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 C2CD4AQ8NCU7 369 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 OR5T3Q8NGG3 340 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 THAP11Q96EK4 314 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 CFAP36Q96G28 342 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 ZNF354BQ96LW1 612 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 TSPAN10Q9H1Z9 355 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 ARL15Q9NXU5 204 aa16.59■□□□□ 0.25
SHKBP1-223ENST00000600552 KCNE1BA0A087WTH5 132 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 NDUFS4O43181 175 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 HNRNPRO43390 633 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 WISP2O76076 250 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 GUCA1CO95843 209 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 SNRPB2P08579 225 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 SLC35G6P0C7Q6 338 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 SAT1P21673 171 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 GABRB3P28472 473 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 HNF4AP41235 474 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 MAGEA3P43357 314 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 OC90Q02509 493 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 PDAP1Q13442 181 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 ABRAXAS2Q15018 415 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 NSDHLQ15738 373 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 INAQ16352 499 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 CYP1B1Q16678 543 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 RNASEH2BQ5TBB1 312 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 LRRC8EQ6NSJ5 796 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 CRLF3Q8IUI8 442 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 SLC35F6Q8N357 371 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 MFSD9Q8NBP5 474 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 GABPB2Q8TAK5 448 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 TSLPQ969D9 159 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 MOCOSQ96EN8 888 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 OSBPL9Q96SU4 736 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 HES7Q9BYE0 225 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 UNKQ9C0B0 810 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 ABI3Q9P2A4 366 aa16.58■□□□□ 0.24
SHKBP1-223ENST00000600552 EIF3FO00303 357 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 TTI1O43156 1089 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 MAN1A2O60476 641 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 B4GALT2O60909 372 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 DNAJB6O75190 326 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 AHSGP02765 367 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 NPPBP16860 134 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 CCR8P51685 355 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 OR4D2P58180 307 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 IL2P60568 153 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 RBPJQ06330 500 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 MSS51Q4VC12 460 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 SPANXN3Q5MJ09 141 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 PLAG1Q6DJT9 500 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 PAPD4Q6PIY7 484 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 LCTLQ6UWM7 567 aa16.57■□□□□ 0.24
SHKBP1-223ENST00000600552 IGDCC3Q8IVU1 814 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms