RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 SLC26A5P58743 744 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 PTK6Q13882 451 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 USP10Q14694 798 aaKnown RBP5.74□□□□□ -1.49
VRK3-220ENST00000600259 RPS6KA1Q15418 735 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 SIX1Q15475 284 aaPredicted RBP5.74□□□□□ -1.49
VRK3-220ENST00000600259 EXT1Q16394 746 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 NDUFA9Q16795 377 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 SFT2D3Q587I9 215 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 EMC4Q5J8M3 183 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 ZNF549Q6P9A3 640 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 PAPD4Q6PIY7 484 aaKnown RBP5.74□□□□□ -1.49
VRK3-220ENST00000600259 RPS19BP1Q86WX3 136 aaKnown RBP5.74□□□□□ -1.49
VRK3-220ENST00000600259 DMRTC2Q8IXT2 367 aaPredicted RBP5.74□□□□□ -1.49
VRK3-220ENST00000600259 GHDCQ8N2G8 530 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 KIF2BQ8N4N8 673 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 AFAP1L2Q8N4X5 818 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 RAB42Q8N4Z0 105 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 CPSF7Q8N684 471 aaKnown RBP5.74□□□□□ -1.49
VRK3-220ENST00000600259 TMEM178AQ8NBL3 297 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 KCT2Q8NC54 265 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 ACRBPQ8NEB7 543 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 NFAM1Q8NET5 270 aaPredicted RBP5.74□□□□□ -1.49
VRK3-220ENST00000600259 PPHLN1Q8NEY8 458 aaKnown RBP5.74□□□□□ -1.49
VRK3-220ENST00000600259 GIMAP7Q8NHV1 300 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 C16orf52Q8NHV5 167 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 GSDMBQ8TAX9 411 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 CHTF18Q8WVB6 975 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 SKA2Q8WVK7 121 aaPredicted RBP5.74□□□□□ -1.49
VRK3-220ENST00000600259 C1orf54Q8WWF1 131 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 METTL21AQ8WXB1 218 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 RERGQ96A58 199 aaPredicted RBP5.74□□□□□ -1.49
VRK3-220ENST00000600259 FAM136AQ96C01 138 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 TCF12Q99081 682 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 UCK2Q9BZX2 261 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 CXXC4Q9H2H0 198 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 CDCP1Q9H5V8 836 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 TMEM184CQ9NVA4 438 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 HCN3Q9P1Z3 774 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 LRFN1Q9P244 771 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 KLHL42Q9P2K6 505 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 TSR3Q9UJK0 312 aaKnown RBP5.74□□□□□ -1.49
VRK3-220ENST00000600259 SH2B3Q9UQQ2 575 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 CRYL1Q9Y2S2 319 aa5.74□□□□□ -1.49
VRK3-220ENST00000600259 ABCA4P78363 2273 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 TCRBV7S3A2A0A539 114 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 FAM221AA4D161 298 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 MAGEB17A8MXT2 336 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 H3BMM5 538 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 DIAPH2O60879 1101 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 CCNDBP1O95273 360 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 MLYCDO95822 493 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 IFNB1P01574 187 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 CATP04040 527 aaKnown RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 HOXD4P09016 255 aaPredicted RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 MPC1LP0DKB6 136 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 ABOP16442 354 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 CHRM3P20309 590 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 MGAT1P26572 445 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 TPP2P29144 1249 aaPredicted RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 IMPA1P29218 277 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 DNAJA1P31689 397 aaKnown RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 COILP38432 576 aaPredicted RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 AVPR1BP47901 424 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 NAP1L1P55209 391 aaKnown RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 MLF1P58340 268 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 MPP1Q00013 466 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 TIAL1Q01085 375 aaKnown RBP eCLIP5.73□□□□□ -1.49
VRK3-220ENST00000600259 NSDHLQ15738 373 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 MAPKAPK3Q16644 382 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 SKOR2Q2VWA4 1001 aaPredicted RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 MINDY4Q4G0A6 757 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 CMPK2Q5EBM0 449 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 PEX26Q7Z412 305 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 SLC26A11Q86WA9 606 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 SLC13A5Q86YT5 568 aaPredicted RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 CILP2Q8IUL8 1156 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 TMEM139Q8IV31 216 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 RPRMLQ8N4K4 120 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 PRELID2Q8N945 189 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 RNF214Q8ND24 703 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 OR4K1Q8NGD4 311 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 OR5T3Q8NGG3 340 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 FAM57AQ8TBR7 257 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 CA5BP1Q8WTZ4 195 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 NRGNQ92686 78 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 TSLPQ969D9 159 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 THAP11Q96EK4 314 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 PANX2Q96RD6 677 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 LPAR4Q99677 370 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 EBNA1BP2Q99848 306 aaKnown RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 SARGQ9BW04 601 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 FRMD8P1Q9BZ68 369 aaPredicted RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 IL22Q9GZX6 179 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 EIF2B3Q9NR50 452 aaKnown RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 UTP6Q9NYH9 597 aaKnown RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 PAK5Q9P286 719 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 C19orf25Q9UFG5 118 aaPredicted RBP5.73□□□□□ -1.49
VRK3-220ENST00000600259 PPT2Q9UMR5 302 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 ZNF148Q9UQR1 794 aa5.73□□□□□ -1.49
VRK3-220ENST00000600259 RNF6Q9Y252 685 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms