RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 TSNARE1Q96NA8 513 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 AGAP4Q96P64 663 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 HAUS8Q9BT25 410 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 RBCK1Q9BYM8 510 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 UNKQ9C0B0 810 aaKnown RBP12.35□□□□□ -0.43
LIG1-212ENST00000596549 VN1R1Q9GZP7 353 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 CAB39LQ9H9S4 337 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 WHRNQ9P202 907 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 MAP10Q9P2G4 905 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 MKL2Q9ULH7 1088 aa12.35□□□□□ -0.43
LIG1-212ENST00000596549 USP9XQ93008 2570 aaPredicted RBP12.34□□□□□ -0.43
LIG1-212ENST00000596549 TCRBV9S1A1TA0A576 114 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 TRBC2A0A5B9 178 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 ZNF860A6NHJ4 632 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 C4orf51C9J302 202 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 SEMA7AO75326 666 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 HEXBP07686 556 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 SLC35G6P0C7Q6 338 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 PRR35P0CG20 571 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 XCR1P46094 333 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 CCR8P51685 355 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 GPX6P59796 221 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 ETF1P62495 437 aaKnown RBP12.34□□□□□ -0.43
LIG1-212ENST00000596549 REEP5Q00765 189 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 MFAP5Q13361 173 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 NR6A1Q15406 480 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 TSNQ15631 228 aaKnown RBP12.34□□□□□ -0.43
LIG1-212ENST00000596549 C18orf21Q32NC0 220 aaPredicted RBP12.34□□□□□ -0.43
LIG1-212ENST00000596549 SYT10Q6XYQ8 523 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 LINC00696Q6ZRV3 163 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 NDUFAF7Q7L592 441 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 TMPRSS11BQ86T26 416 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 AFAP1L2Q8N4X5 818 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 NKAPQ8N5F7 415 aaKnown RBP12.34□□□□□ -0.43
LIG1-212ENST00000596549 ANKRD53Q8N9V6 530 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 CAMKVQ8NCB2 501 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 BBOF1Q8ND07 529 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 OR5T3Q8NGG3 340 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 OR51Q1Q8NH59 317 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 SLC13A3Q8WWT9 602 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 SLC5A11Q8WWX8 675 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 VPS50Q96JG6 964 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 RBBP8Q99708 897 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 BARD1Q99728 777 aaKnown RBP12.34□□□□□ -0.43
LIG1-212ENST00000596549 TRIM54Q9BYV2 358 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 ZNF700Q9H0M5 742 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 EPS8L2Q9H6S3 715 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 POPDC3Q9HBV1 291 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 SAYSD1Q9NPB0 183 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 RIC8BQ9NVN3 520 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 NSMCE4AQ9NXX6 385 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 OARD1Q9Y530 152 aa12.34□□□□□ -0.43
LIG1-212ENST00000596549 IGHV3-20A0A0C4DH32 117 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 BLACEA4D250 179 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 PABPN1LA6NDY0 278 aaKnown RBP12.33□□□□□ -0.44
LIG1-212ENST00000596549 OR2W5A6NFC9 320 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 E2F3O00716 465 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 NDC80O14777 642 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 EIF3HO15372 352 aaKnown RBP eCLIP12.33□□□□□ -0.44
LIG1-212ENST00000596549 NDUFS4O43181 175 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 OR1F1O43749 312 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 B3GALT4O96024 378 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 C8orf89P0DMQ9 161 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 ITGAMP11215 1152 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 GRK3P35626 688 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 GMPRP36959 345 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 SCTRP47872 440 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 CDKL1Q00532 357 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 CALCOCO2Q13137 446 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 TRADDQ15628 312 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 IRAK1BP1Q5VVH5 260 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 ZDHHC24Q6UX98 284 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 ISLR2Q6UXK2 745 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 ZNF572Q7Z3I7 529 aaPredicted RBP12.33□□□□□ -0.44
LIG1-212ENST00000596549 THOC6Q86W42 341 aaKnown RBP12.33□□□□□ -0.44
LIG1-212ENST00000596549 KBTBD2Q8IY47 623 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 SIRT6Q8N6T7 355 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 FBXO25Q8TCJ0 367 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 PYROXD1Q8WU10 500 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 ATL1Q8WXF7 558 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 ANKRD7Q92527 254 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 CNDP1Q96KN2 507 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 IMMP1LQ96LU5 166 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 TMEM79Q9BSE2 394 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 SLC29A3Q9BZD2 475 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 AICDAQ9GZX7 198 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 ANKHQ9HCJ1 492 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 GPAMQ9HCL2 828 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 PTGFRNQ9P2B2 879 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 SLC22A14Q9Y267 594 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 MTO1Q9Y2Z2 717 aaKnown RBP12.33□□□□□ -0.44
LIG1-212ENST00000596549 NAALAD2Q9Y3Q0 740 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 SLC22A7Q9Y694 548 aa12.33□□□□□ -0.44
LIG1-212ENST00000596549 ESPL1Q14674 2120 aa12.32□□□□□ -0.44
LIG1-212ENST00000596549 CROCCQ5TZA2 2017 aa12.32□□□□□ -0.44
LIG1-212ENST00000596549 FAM159BA6NKW6 160 aa12.32□□□□□ -0.44
LIG1-212ENST00000596549 PCDH17O14917 1159 aa12.32□□□□□ -0.44
LIG1-212ENST00000596549 PHGDHO43175 533 aaKnown RBP12.32□□□□□ -0.44
LIG1-212ENST00000596549 DNAJB6O75190 326 aa12.32□□□□□ -0.44
LIG1-212ENST00000596549 SEC24DO94855 1032 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms