RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 LRRTM2O43300 516 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 SEC31AO94979 1220 aaKnown RBP19.36■□□□□ 0.69
SHMT1-209ENST00000582653 GUCA1CO95843 209 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 SAT1P21673 171 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 ARL4CP56559 192 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 AP2B1P63010 937 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 MRPS25P82663 173 aaKnown RBP19.36■□□□□ 0.69
SHMT1-209ENST00000582653 FASTKD3Q14CZ7 662 aaKnown RBP19.36■□□□□ 0.69
SHMT1-209ENST00000582653 PCOLCEQ15113 449 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 CAPN13Q6MZZ7 669 aaPredicted RBP19.36■□□□□ 0.69
SHMT1-209ENST00000582653 FAM45BPQ6NSW5 357 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 TMEM214Q6NUQ4 689 aaKnown RBP19.36■□□□□ 0.69
SHMT1-209ENST00000582653 FAM180AQ6UWF9 173 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 TMEM207Q6UWW9 146 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 BCORP1Q8N888 145 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 FAM45AQ8TCE6 357 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 SLC13A3Q8WWT9 602 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 LRRC39Q96DD0 335 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 THAP11Q96EK4 314 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 SNF8Q96H20 258 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 IMMP1LQ96LU5 166 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 RUNDC3BQ96NL0 473 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 OR4K3Q96R72 315 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 UNC79Q9P2D8 2635 aa19.36■□□□□ 0.69
SHMT1-209ENST00000582653 TRAV17A0A0B4J275 112 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 IGHV3-20A0A0C4DH32 117 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 FANCGO15287 622 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 NSA2O95478 260 aaKnown RBP19.35■□□□□ 0.69
SHMT1-209ENST00000582653 CCND1P24385 295 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 PDIA2Q13087 525 aaKnown RBP19.35■□□□□ 0.69
SHMT1-209ENST00000582653 MFSD4BQ5TF39 518 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 DUPD1Q68J44 220 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 ZNF324BQ6AW86 544 aaPredicted RBP19.35■□□□□ 0.69
SHMT1-209ENST00000582653 ZNF787Q6DD87 383 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 ASPGQ86U10 573 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 PDSS2Q86YH6 399 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 CAMKVQ8NCB2 501 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 FBXO36Q8NEA4 188 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 OR51Q1Q8NH59 317 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 MOCOSQ96EN8 888 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 CYTH2Q99418 400 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 KRT12Q99456 494 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 TUBB6Q9BUF5 446 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 VN1R1Q9GZP7 353 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 CORO1CQ9ULV4 474 aaPredicted RBP19.35■□□□□ 0.69
SHMT1-209ENST00000582653 SNX24Q9Y343 169 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 POLEQ07864 2286 aa19.35■□□□□ 0.69
SHMT1-209ENST00000582653 CNTRLQ7Z7A1 2325 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 EFCAB8A8MWE9 144 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 CCDC188H7C350 402 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 F10P00742 488 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 CYC1P08574 325 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 C8orf89P0DMQ9 161 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 ITGAMP11215 1152 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 DCTP40126 519 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 PAFAH1B1P43034 410 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 XCR1P46094 333 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 RPL21P46778 160 aaKnown RBP19.34■□□□□ 0.69
SHMT1-209ENST00000582653 MINDY4Q4G0A6 757 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 CATSPEREQ5SY80 951 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 LANCL3Q6ZV70 420 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 MFSD9Q8NBP5 474 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 OR56A3Q8NH54 315 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 METTL21AQ8WXB1 218 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 HAUS8Q9BT25 410 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 TRIM54Q9BYV2 358 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 OLAHQ9NV23 265 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 STMN3Q9NZ72 180 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 ZFATQ9P243 1243 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 DOPEY1Q5JWR5 2465 aa19.34■□□□□ 0.69
SHMT1-209ENST00000582653 PABPN1LA6NDY0 278 aaKnown RBP19.33■□□□□ 0.68
SHMT1-209ENST00000582653 OR1F1O43749 312 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 RDH16O75452 317 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 PIAS1O75925 651 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 STSP08842 583 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 GRK3P35626 688 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 CCR8P51685 355 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 AP1S2P56377 157 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 PER3P56645 1201 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 MGAT5Q09328 741 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 ZNF460Q14592 562 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 STRA8Q7Z7C7 330 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 ZNF740Q8NDX6 193 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 ABHD11Q8NFV4 315 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 OR4K1Q8NGD4 311 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 FBXL8Q96CD0 374 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 PDLIM2Q96JY6 352 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 TAAR6Q96RI8 345 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 FAM129AQ9BZQ8 928 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 RNF32Q9H0A6 362 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 ANKHQ9HCJ1 492 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 NAALAD2Q9Y3Q0 740 aa19.33■□□□□ 0.68
SHMT1-209ENST00000582653 A0A1B0GUH1 482 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 ZNF860A6NHJ4 632 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 CDC7O00311 574 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 DNAJB6O75190 326 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 SEC24DO94855 1032 aaPredicted RBP19.32■□□□□ 0.68
SHMT1-209ENST00000582653 WDPCPO95876 746 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 B3GALT4O96024 378 aa19.32■□□□□ 0.68
SHMT1-209ENST00000582653 UQCRHP07919 91 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms