RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 A0A0X1KG70 313 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 TNFRSF11BO00300 401 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 OR4Q2P0C623 313 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 ADORA3P0DMS8 318 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 MLLT3P42568 568 aaPredicted RBP9.27□□□□□ -0.93
CCDC40-212ENST00000574799 GZMKP49863 264 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 TARDBPQ13148 414 aaKnown RBP eCLIP9.27□□□□□ -0.93
CCDC40-212ENST00000574799 BTN1A1Q13410 526 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 ERICH5Q6P6B1 374 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 TAC4Q86UU9 113 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 TMEM86AQ8N2M4 240 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 GTPBP3Q969Y2 492 aaKnown RBP9.27□□□□□ -0.93
CCDC40-212ENST00000574799 C1GALT1C1Q96EU7 318 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 PANX1Q96RD7 426 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 IL4I1Q96RQ9 567 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 SLC9A7Q96T83 725 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 IPPKQ9H8X2 491 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 TREX1Q9NSU2 369 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 CLN6Q9NWW5 311 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 SLC9A8Q9Y2E8 581 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 ARL5AQ9Y689 179 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 IFRD1O00458 451 aaPredicted RBP9.27□□□□□ -0.93
CCDC40-212ENST00000574799 CACNG3O60359 315 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 EVI2BP34910 448 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 PIK3CBP42338 1070 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 GNPDA1P46926 289 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 GPR15P49685 360 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 ACLYP53396 1101 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 SPIBQ01892 262 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 HNRNPA0Q13151 305 aaKnown RBP9.27□□□□□ -0.93
CCDC40-212ENST00000574799 GPR19Q15760 415 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 PARP15Q460N3 678 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 ANKRD54Q6NXT1 300 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 KIF18BQ86Y91 864 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 ARHGAP12Q8IWW6 846 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 NKAPQ8N5F7 415 aaKnown RBP9.27□□□□□ -0.93
CCDC40-212ENST00000574799 DPP10Q8N608 796 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 PEX13Q92968 403 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 KIAA1191Q96A73 305 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 C8orf48Q96LL4 319 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 ACBD6Q9BR61 282 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 DPCDQ9BVM2 203 aaPredicted RBP9.27□□□□□ -0.93
CCDC40-212ENST00000574799 CFHR5Q9BXR6 569 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 POLR2J2Q9GZM3 115 aaKnown RBP9.27□□□□□ -0.93
CCDC40-212ENST00000574799 IKZF5Q9H5V7 419 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 VNN3Q9NY84 501 aa9.27□□□□□ -0.93
CCDC40-212ENST00000574799 M0R082 166 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 RPL9P32969 192 aaKnown RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 GRK5P34947 590 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 SREBF2Q12772 1141 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 NCF4Q15080 339 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 ZMYND11Q15326 602 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 CPSF6Q16630 551 aaKnown RBP eCLIP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 PIK3R6Q5UE93 754 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 LRRC66Q68CR7 880 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 CHMP1BQ7LBR1 199 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 ZSWIM9Q86XI8 627 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 GGHQ92820 318 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 MYEOVQ96EZ4 313 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 HSH2DQ96JZ2 352 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 C2orf49Q9BVC5 232 aaPredicted RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 MFSD1Q9H3U5 465 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 MRM3Q9HC36 420 aaKnown RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 EVA1BQ9NVM1 165 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 A0A0G2JMP0 313 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 CIB4A0PJX0 185 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 NBNO60934 754 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 PEX11BO96011 259 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 CDK1P06493 297 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 PRSS56P0CW18 603 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 MYL12AP19105 171 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 HSPA7P48741 367 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 LHX1P48742 406 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 ZNF81P51508 661 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 VEPH1Q14D04 833 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 AFMIDQ63HM1 303 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 CAPN13Q6MZZ7 669 aaPredicted RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 CREB3L2Q70SY1 520 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 ENTHD1Q8IYW4 607 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 SH3RF2Q8TEC5 729 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 CRELD1Q96HD1 420 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 C12orf10Q9HB07 376 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 LRTM1Q9HBL6 345 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 ZNF624Q9P2J8 865 aaPredicted RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 ALG5Q9Y673 324 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 A0A1W2PQL4 384 aaPredicted RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 INMT-MINDY4F8WBC2 141 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 H3BN98 237 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 CCNDBP1O95273 360 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 OTCP00480 354 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 IL6P05231 212 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 GSTM1P09488 218 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 HOXC13P31276 330 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 AIF1P55008 147 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 CDH12P55289 794 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 RPL6Q02878 288 aaKnown RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 LRRC74AQ0VAA2 488 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 ZSWIM7Q19AV6 140 aa9.26□□□□□ -0.93
CCDC40-212ENST00000574799 USP39Q53GS9 565 aaKnown RBP9.26□□□□□ -0.93
CCDC40-212ENST00000574799 NADSYN1Q6IA69 706 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms