RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SH3BGRL2Q9UJC5 107 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 SH2B3Q9UQQ2 575 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 APCP25054 2843 aa19.87■□□□□ 0.77
VPS53-216ENST00000574029 SCN3AQ9NY46 2000 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 HAUS5O94927 633 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 CXCR5P32302 372 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 MAGEA3P43357 314 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 CASP6P55212 293 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 EXT1Q16394 746 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 MEP1AQ16819 746 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 TTC27Q6P3X3 843 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 XKRXQ6PP77 449 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 PDSS2Q86YH6 399 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 AGGF1Q8N302 714 aaeCLIP19.86■□□□□ 0.77
VPS53-216ENST00000574029 KCT2Q8NC54 265 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 CALML6Q8TD86 181 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 THAP3Q8WTV1 239 aaPredicted RBP19.86■□□□□ 0.77
VPS53-216ENST00000574029 SCMH1Q96GD3 660 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 PHF12Q96QT6 1004 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 AARSD1Q9BTE6 412 aaKnown RBP19.86■□□□□ 0.77
VPS53-216ENST00000574029 ANKHQ9HCJ1 492 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 MMP25Q9NPA2 562 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 C20orf96Q9NUD7 363 aaPredicted RBP19.86■□□□□ 0.77
VPS53-216ENST00000574029 ADAMTS6Q9UKP5 1117 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 FBXO5Q9UKT4 447 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 ZNF835Q9Y2P0 537 aa19.86■□□□□ 0.77
VPS53-216ENST00000574029 FEZF1A0PJY2 475 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 TTI1O43156 1089 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 LCMT2O60294 686 aaKnown RBP19.85■□□□□ 0.77
VPS53-216ENST00000574029 CD96P40200 585 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 ADORA2A-AS1P86434 159 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 MPP1Q00013 466 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 RHAGQ02094 409 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 LRRC8EQ6NSJ5 796 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 GDF7Q7Z4P5 450 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 ASPGQ86U10 573 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 C17orf64Q86WR6 236 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 PLPP5Q8NEB5 264 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 TRIM58Q8NG06 486 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 ZCCHC10Q8TBK6 192 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 GPR137Q96N19 417 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 UTP23Q9BRU9 249 aaKnown RBP19.85■□□□□ 0.77
VPS53-216ENST00000574029 FAM129AQ9BZQ8 928 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 PDE10AQ9Y233 779 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 PPP2R2CQ9Y2T4 447 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 SLC22A7Q9Y694 548 aa19.85■□□□□ 0.77
VPS53-216ENST00000574029 NCOA6Q14686 2063 aaPredicted RBP19.85■□□□□ 0.77
VPS53-216ENST00000574029 ASPDHA6ND91 283 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 GOLGA8MH3BSY2 632 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 RDH16O75452 317 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 C8GP07360 202 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 AGAP20933 346 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 IL10P22301 178 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 COILP38432 576 aaPredicted RBP19.84■□□□□ 0.77
VPS53-216ENST00000574029 TIAL1Q01085 375 aaKnown RBP eCLIP19.84■□□□□ 0.77
VPS53-216ENST00000574029 OR1C1Q15619 314 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 C3AR1Q16581 482 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 KRTCAP3Q53RY4 240 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 SFT2D3Q587I9 215 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 PAPD4Q6PIY7 484 aaKnown RBP19.84■□□□□ 0.77
VPS53-216ENST00000574029 AGTRAPQ6RW13 159 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 Q6ZPB1 254 aaPredicted RBP19.84■□□□□ 0.77
VPS53-216ENST00000574029 SLC26A11Q86WA9 606 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 EEF1AKMT1Q8WVE0 214 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 SLC13A3Q8WWT9 602 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 SIGLEC10Q96LC7 697 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 SGPP1Q9BX95 441 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 HES7Q9BYE0 225 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 LANCL2Q9NS86 450 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 NAALAD2Q9Y3Q0 740 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 NEU2Q9Y3R4 380 aa19.84■□□□□ 0.77
VPS53-216ENST00000574029 MAN1A2O60476 641 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 MLYCDO95822 493 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 CCND1P24385 295 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 SP140Q13342 867 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 NSDHLQ15738 373 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 ZXDCQ2QGD7 858 aaPredicted RBP19.83■□□□□ 0.77
VPS53-216ENST00000574029 SPINK14Q6IE38 97 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 CAPN13Q6MZZ7 669 aaPredicted RBP19.83■□□□□ 0.77
VPS53-216ENST00000574029 UGT3A1Q6NUS8 523 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 LCTLQ6UWM7 567 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 MBOAT1Q6ZNC8 495 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 MFSD9Q8NBP5 474 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 OR1F2PQ96R84 312 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 LPAR4Q99677 370 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 FAM167BQ9BTA0 163 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 ATG10Q9H0Y0 220 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 PARVBQ9HBI1 364 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 KLHL1Q9NR64 748 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 ANKRD10Q9NXR5 420 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 TRMT6Q9UJA5 497 aaKnown RBP19.83■□□□□ 0.77
VPS53-216ENST00000574029 TINAGQ9UJW2 476 aa19.83■□□□□ 0.77
VPS53-216ENST00000574029 FBN2P35556 2912 aa19.83■□□□□ 0.76
VPS53-216ENST00000574029 PDZD2O15018 2839 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 MAGEB17A8MXT2 336 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 SLC16A5O15375 505 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 SLC35G6P0C7Q6 338 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 ESRRAP11474 423 aaPredicted RBP19.82■□□□□ 0.76
VPS53-216ENST00000574029 COX6B1P14854 86 aa19.82■□□□□ 0.76
VPS53-216ENST00000574029 CD46P15529 392 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms