RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 HIBCHQ6NVY1 386 aaPredicted RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 FAM180AQ6UWF9 173 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 MBOAT1Q6ZNC8 495 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 RIPOR1Q6ZS17 1223 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 PIWIL4Q7Z3Z4 852 aaKnown RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 YTHDF3Q7Z739 585 aaKnown RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 SDCCAG8Q86SQ7 713 aaPredicted RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 CTAGE6Q86UF2 777 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 PACS2Q86VP3 889 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 PDSS2Q86YH6 399 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 SRRM1Q8IYB3 904 aaKnown RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 CPNE9Q8IYJ1 553 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 SLC34A3Q8N130 599 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 RASGEF1CQ8N431 466 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 RAB42Q8N4Z0 105 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 OTUD6BQ8N6M0 293 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 MCUQ8NE86 351 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 ARMC2Q8NEN0 867 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 OR9A4Q8NGU2 314 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 GSDMBQ8TAX9 411 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 KCNJ9Q92806 393 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 MARVELD3Q96A59 401 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 ZNF669Q96BR6 464 aaPredicted RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 CCDC120Q96HB5 630 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 RSRC1Q96IZ7 334 aaKnown RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 PRAP1Q96NZ9 151 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 SERPINB12Q96P63 405 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 CYTH2Q99418 400 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 HES7Q9BYE0 225 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 DRC3Q9H069 523 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 PLAC1Q9HBJ0 212 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 RIC8BQ9NVN3 520 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 ABI3Q9P2A4 366 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 MKL2Q9ULH7 1088 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 CDC14AQ9UNH5 594 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 A0A1B0GUH1 482 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 FEZF1A0PJY2 475 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 ARHGAP10A1A4S6 786 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 DYTNA2CJ06 578 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 OR5H15A6NDH6 313 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 SDR42E2A6NKP2 422 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 E5RI56 91 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 H0YIG0 161 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 GOLGA8MH3BSY2 632 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 PRPF4O43172 522 aaKnown RBP eCLIP6.34□□□□□ -1.39
VPS53-213ENST00000572334 HNRNPRO43390 633 aaKnown RBP6.34□□□□□ -1.39
VPS53-213ENST00000572334 KIF5CO60282 957 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 CEP104O60308 925 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 PRAMEF2O60811 474 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 CCNDBP1O95273 360 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 TSPAN12O95859 305 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 KRT14P02533 472 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 C8orf89P0DMQ9 161 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 MLNP12872 115 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 IL1RNP18510 177 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 CXCR2P25025 360 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 BCL6P41182 706 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 CA7P43166 264 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 PGGT1BP53609 377 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 TBPL1P62380 186 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 ABATP80404 500 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 ADORA2A-AS1P86434 159 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 RHAGQ02094 409 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 ART3Q13508 389 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 CYP1B1Q16678 543 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 WHAMMP3Q1A5X7 153 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 RBM20Q5T481 1227 aaKnown RBP6.34□□□□□ -1.39
VPS53-213ENST00000572334 FCRLBQ6BAA4 426 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 PLAG1Q6DJT9 500 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 GSTA5Q7RTV2 222 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 CPEB2Q7Z5Q1 589 aaKnown RBP6.34□□□□□ -1.39
VPS53-213ENST00000572334 ANKRD37Q7Z713 158 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 PCGF5Q86SE9 256 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 CHERPQ8IWX8 916 aaKnown RBP6.34□□□□□ -1.39
VPS53-213ENST00000572334 BEST3Q8N1M1 668 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 AFAP1L2Q8N4X5 818 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 NAT8LQ8N9F0 302 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 KCT2Q8NC54 265 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 MDS2Q8NDY4 140 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 OR51Q1Q8NH59 317 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 MAIP1Q8WWC4 291 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 ITFG2Q969R8 447 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 MOCOSQ96EN8 888 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 MS4A14Q96JA4 679 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 VPS50Q96JG6 964 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 MAGEB10Q96LZ2 347 aaPredicted RBP6.34□□□□□ -1.39
VPS53-213ENST00000572334 SIGLEC12Q96PQ1 595 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 AARSD1Q9BTE6 412 aaKnown RBP6.34□□□□□ -1.39
VPS53-213ENST00000572334 TUBB6Q9BUF5 446 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 YIPF2Q9BWQ6 316 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 SGPP1Q9BX95 441 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 FUT8Q9BYC5 575 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 LZTFL1Q9NQ48 299 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 FAM114A2Q9NRY5 505 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 LANCL2Q9NS86 450 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 ABCF3Q9NUQ8 709 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 TMEM184CQ9NVA4 438 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 TRMT1Q9NXH9 659 aaKnown RBP6.34□□□□□ -1.39
VPS53-213ENST00000572334 HCN3Q9P1Z3 774 aa6.34□□□□□ -1.39
VPS53-213ENST00000572334 RAB21Q9UL25 225 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms