RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PRAMEF10O60809 474 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 CTSVO60911 334 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 CPNE3O75131 537 aaKnown RBP19.67■□□□□ 0.74
VPS53-210ENST00000571456 IMPDH1P20839 514 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 HPDP32754 393 aaPredicted RBP19.67■□□□□ 0.74
VPS53-210ENST00000571456 AHRP35869 848 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 PRKAA2P54646 552 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 GTF2H2Q13888 395 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 HIST2H2ACQ16777 129 aaPredicted RBP19.67■□□□□ 0.74
VPS53-210ENST00000571456 HIST2H2AA3Q6FI13 130 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 GTF2H2CQ6P1K8 395 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 ZYG11AQ6WRX3 759 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 TMPRSS11BQ86T26 416 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 TMEM126BQ8IUX1 230 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 TTC29Q8NA56 475 aaPredicted RBP19.67■□□□□ 0.74
VPS53-210ENST00000571456 OR1L3Q8NH93 324 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 PHF21BQ96EK2 531 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 PSMG3-AS1Q96PY0 264 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 OR2A5Q96R48 311 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 DPH2Q9BQC3 489 aaPredicted RBP19.67■□□□□ 0.74
VPS53-210ENST00000571456 EMCNQ9ULC0 261 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 KLHL20Q9Y2M5 609 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 CACNA1DQ01668 2161 aa19.67■□□□□ 0.74
VPS53-210ENST00000571456 UQCRHLA0A096LP55 91 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 A0A0J9YVX5 310 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 FITM1A5D6W6 292 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 E2F3O00716 465 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 TM9SF1O15321 606 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 ZSCAN9O15535 394 aaPredicted RBP19.66■□□□□ 0.74
VPS53-210ENST00000571456 SCRG1O75711 98 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 UQCRHP07919 91 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 RPS17P08708 135 aaKnown RBP19.66■□□□□ 0.74
VPS53-210ENST00000571456 EEF1DP29692 281 aaKnown RBP19.66■□□□□ 0.74
VPS53-210ENST00000571456 SERPINB1P30740 379 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 HNF4AP41235 474 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 AGTR2P50052 363 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 DNAJB13P59910 316 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 YBX1P67809 324 aaKnown RBP19.66■□□□□ 0.74
VPS53-210ENST00000571456 REEP5Q00765 189 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 IRF8Q02556 426 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 C18orf21Q32NC0 220 aaPredicted RBP19.66■□□□□ 0.74
VPS53-210ENST00000571456 C10orf62Q5T681 223 aaPredicted RBP19.66■□□□□ 0.74
VPS53-210ENST00000571456 GARNL3Q5VVW2 1013 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 LIPJQ5W064 366 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 C16orf46Q6P387 395 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 EXOC3L1Q86VI1 746 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 TEX9Q8N6V9 391 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 GOLGA6L1Q8N7Z2 621 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 CCDC63Q8NA47 563 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 MFSD9Q8NBP5 474 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 CAMKVQ8NCB2 501 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 L3HYPDHQ96EM0 354 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 ULBP3Q9BZM4 244 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 TMBIM4Q9HC24 238 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 APMAPQ9HDC9 416 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 IRAK4Q9NWZ3 460 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 PCDHGA4Q9Y5G9 962 aa19.66■□□□□ 0.74
VPS53-210ENST00000571456 H3BMH7 237 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 HAT1O14929 419 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 PRPF4O43172 522 aaKnown RBP eCLIP19.65■□□□□ 0.741e-8■■□□□ 11.6
VPS53-210ENST00000571456 TYROBPO43914 113 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 DLX3O60479 287 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 WFS1O76024 890 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 CPA3P15088 417 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 SLC18A1P54219 525 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 XKR6Q5GH73 641 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 CATSPEREQ5SY80 951 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 AGBL2Q5U5Z8 902 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 NIPAL1Q6NVV3 410 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 ESX1Q8N693 406 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 TRPV3Q8NET8 790 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 PROKR1Q8TCW9 393 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 PPP4R1Q8TF05 950 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 ESAMQ96AP7 390 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 C17orf62Q9BQA9 187 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 NDC1Q9BTX1 674 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 NTMT1Q9BV86 223 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 SPRY4Q9C004 299 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 SLC7A5P2Q9GIP4 190 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 ADGRE2Q9UHX3 823 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 ZFP69BQ9UJL9 534 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 PCTPQ9UKL6 214 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 SH2B3Q9UQQ2 575 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 TSC22D4Q9Y3Q8 395 aa19.65■□□□□ 0.74
VPS53-210ENST00000571456 SDK2Q58EX2 2172 aa19.64■□□□□ 0.74
VPS53-210ENST00000571456 FOXO6A8MYZ6 492 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 H0YGG7 62 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 STK17BO94768 372 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 ZWINTO95229 277 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 OTCP00480 354 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 SLC35G6P0C7Q6 338 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 LIPCP11150 499 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 SCTRP47872 440 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 ARF3P61204 181 aaPredicted RBP19.64■□□□□ 0.73
VPS53-210ENST00000571456 CHIT1Q13231 466 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 PWP1Q13610 501 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 NDUFA9Q16795 377 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 DEFB110Q30KQ9 67 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 WASHC2DQ5SRD0 308 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 RHBDD2Q6NTF9 364 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms