RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 DNASE2BQ8WZ79 361 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 UTP4Q969X6 686 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 TSACCQ96A04 125 aaPredicted RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 MTFMTQ96DP5 389 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 PDXPQ96GD0 296 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 LRGUKQ96M69 825 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 HHIPQ96QV1 700 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 GPATCH1Q9BRR8 931 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 MENTQ9BUN1 341 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 KCNH6Q9H252 994 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 SRMSQ9H3Y6 488 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 DENND2DQ9H6A0 471 aaPredicted RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 CLMPQ9H6B4 373 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 ERVMER34-1Q9H9K5 563 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 RNPEPL1Q9HAU8 725 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 MRPS30Q9NP92 439 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 DMRT3Q9NQL9 472 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 PRDM8Q9NQV8 689 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 ENAMQ9NRM1 1142 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 TM7SF3Q9NS93 570 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 CUEDC1Q9NWM3 386 aaPredicted RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 FAM120CQ9NX05 1096 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 TMEM181Q9P2C4 612 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 TBC1D29Q9UFV1 150 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 SUSD2Q9UGT4 822 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 TAC3Q9UHF0 121 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 SLC7A8Q9UHI5 535 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 MCM8Q9UJA3 840 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 CORO2BQ9UQ03 480 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 POMPQ9Y244 141 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 WDR37Q9Y2I8 494 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 POLR3HQ9Y535 204 aaPredicted RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 COL4A2P08572 1712 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 A6NCN8 305 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 MAGEB17A8MXT2 336 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 EVPLLA8MZ36 301 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 C2orf74A8MZ97 194 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 FBP2O00757 339 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 TXNDC9O14530 226 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 ANKRD28O15084 1053 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 VILLO15195 856 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 TBX19O60806 448 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 CSF2P04141 144 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 CELA2BP08218 269 aaPredicted RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 CDH1P12830 882 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 HSD17B1P14061 328 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 ZNF10P21506 573 aaPredicted RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 TIA1P31483 386 aaKnown RBP eCLIP7.65□□□□□ -1.18
VPS39-213ENST00000570062 CNR2P34972 360 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 GCKP35557 465 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 KIR3DL1P43629 444 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 AFF3P51826 1226 aaKnown RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 NEK2P51955 445 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 C21orf59P57076 290 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 STXBP1P61764 594 aaKnown RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 RPS15AP62244 130 aaKnown RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 REEP5Q00765 189 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 RPL6Q02878 288 aaKnown RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 SIGLEC14Q08ET2 396 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 ZNF763Q0D2J5 394 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 FZD2Q14332 565 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 GAS6Q14393 721 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 HEPACAMQ14CZ8 416 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 TLR1Q15399 786 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 ZNF423Q2M1K9 1284 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 MTX3Q5HYI7 312 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 TCHHL1Q5QJ38 904 aaPredicted RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 CATSPEREQ5SY80 951 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 ARMC6Q6NXE6 501 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 SUSD1Q6UWL2 747 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 RABEPKQ7Z6M1 372 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 TAF8Q7Z7C8 310 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 OOSP2Q86WS3 158 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 TMEM132CQ8N3T6 1108 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 ZNF655Q8N720 491 aaPredicted RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 TRIML2Q8N7C3 387 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 LMNTD1Q8N9Z9 388 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 PPFIBP2Q8ND30 876 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 OR8J2Q8NGG1 315 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 OR2A1Q8NGT9 310 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 SNX19Q92543 992 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 RGMAQ96B86 450 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 C11orf24Q96F05 449 aaPredicted RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 ZNF764Q96H86 408 aaPredicted RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 MARK4Q96L34 752 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 APOLD1Q96LR9 279 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 OR52E6Q96RD3 313 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 NPAS2Q99743 824 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 MYOCQ99972 504 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 C1orf50Q9BV19 199 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 SPATA9Q9BWV2 254 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 BHLHE41Q9C0J9 482 aaPredicted RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 TMEM168Q9H0V1 697 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 EPB41L1Q9H4G0 881 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 SLC52A3Q9NQ40 469 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 FARSBQ9NSD9 589 aaKnown RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 STX18Q9P2W9 335 aaKnown RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 ABCD2Q9UBJ2 740 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 CPNE7Q9UBL6 633 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms