RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 NDNQ99608 321 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 SARGQ9BW04 601 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 ATG10Q9H0Y0 220 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 ANKHQ9HCJ1 492 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 HCN3Q9P1Z3 774 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 PCDHGB6Q9Y5F9 930 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 FEZF1A0PJY2 475 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 OR2W5A6NFC9 320 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 TTC4O95801 387 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 TSPAN12O95859 305 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 IL10P22301 178 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 AGTR2P50052 363 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 CDKN2DP55273 166 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 DHX9Q08211 1270 aaKnown RBP16.15■□□□□ 0.18
CLN3-216ENST00000565316 PHKG1Q16816 387 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 ZXDCQ2QGD7 858 aaPredicted RBP16.15■□□□□ 0.18
CLN3-216ENST00000565316 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.15■□□□□ 0.18
CLN3-216ENST00000565316 CAPN13Q6MZZ7 669 aaPredicted RBP16.15■□□□□ 0.18
CLN3-216ENST00000565316 KIAA0408Q6ZU52 694 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 GALNT7Q86SF2 657 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 PALM2Q8IXS6 379 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 AFAP1L2Q8N4X5 818 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 MFSD9Q8NBP5 474 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 PLPP5Q8NEB5 264 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 OR4K1Q8NGD4 311 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 SUN3Q8TAQ9 357 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 M1APQ8TC57 530 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 SLC13A3Q8WWT9 602 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 ZNF354BQ96LW1 612 aa16.15■□□□□ 0.18
CLN3-216ENST00000565316 OTOGQ6ZRI0 2925 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 ENO4A6NNW6 628 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 A8MUI8 341 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 HNRNPRO43390 633 aaKnown RBP16.14■□□□□ 0.17
CLN3-216ENST00000565316 UNC5CO95185 931 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 AHSGP02765 367 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 CDH1P12830 882 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 RHAGQ02094 409 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 EXT1Q16394 746 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 BTBD16Q32M84 506 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 ACER2Q5QJU3 275 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 RBM20Q5T481 1227 aaKnown RBP16.14■□□□□ 0.17
CLN3-216ENST00000565316 MFSD4BQ5TF39 518 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 SP5Q6BEB4 398 aaPredicted RBP16.14■□□□□ 0.17
CLN3-216ENST00000565316 MYO1HQ8N1T3 1032 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 OR56A3Q8NH54 315 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 GABPB2Q8TAK5 448 aaPredicted RBP16.14■□□□□ 0.17
CLN3-216ENST00000565316 ZCCHC10Q8TBK6 192 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 OR1F2PQ96R84 312 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 HAUS8Q9BT25 410 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 NAT9Q9BTE0 207 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 MMP25Q9NPA2 562 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 LANCL2Q9NS86 450 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 COPG2Q9UBF2 871 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 NAALAD2Q9Y3Q0 740 aa16.14■□□□□ 0.17
CLN3-216ENST00000565316 SCN2AQ99250 2005 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 TACC2O95359 2948 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 NRDCO43847 1150 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 RDH16O75452 317 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 SLC35G6P0C7Q6 338 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 GRK3P35626 688 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 CCR8P51685 355 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 ART3Q13508 389 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 HERC3Q15034 1050 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 MSS51Q4VC12 460 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 ZNF766Q5HY98 468 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 SPANXN3Q5MJ09 141 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 DUPD1Q68J44 220 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 TMEM207Q6UWW9 146 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 STRA8Q7Z7C7 330 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 BEST3Q8N1M1 668 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 MDS2Q8NDY4 140 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 ITLN2Q8WWU7 325 aaPredicted RBP16.13■□□□□ 0.17
CLN3-216ENST00000565316 MARVELD3Q96A59 401 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 LINGO1Q96FE5 620 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 OSBPL9Q96SU4 736 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 NPAS2Q99743 824 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 PLAC1Q9HBJ0 212 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 SEC14L3Q9UDX4 400 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 MYO7BQ6PIF6 2116 aa16.13■□□□□ 0.17
CLN3-216ENST00000565316 FBN2P35556 2912 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 GOLGA6L10A0A0M3HER8 536 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 MAGEB17A8MXT2 336 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 CES2O00748 559 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 DNALI1O14645 258 aaPredicted RBP16.12■□□□□ 0.17
CLN3-216ENST00000565316 BANF1O75531 89 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 HIST1H2AGP0C0S8 130 aaPredicted RBP16.12■□□□□ 0.17
CLN3-216ENST00000565316 PRF1P14222 555 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 HIST1H2ADP20671 130 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 CA7P43166 264 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 AP1S2P56377 157 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 IL2P60568 153 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 PWP1Q13610 501 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 TUBA3CQ13748 450 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 NSDHLQ15738 373 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 SFT2D3Q587I9 215 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 TUBA3EQ6PEY2 450 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 IGDCC3Q8IVU1 814 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 SLCO2A1Q92959 643 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 SNF8Q96H20 258 aa16.12■□□□□ 0.17
CLN3-216ENST00000565316 HIST1H2AHQ96KK5 128 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms