RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PARP6Q2NL67 630 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 ASTE1Q2TB18 679 aaPredicted RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 GXYLT1Q4G148 440 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 ANKRD20A4Q4UJ75 823 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 CMPK2Q5EBM0 449 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 AARS2Q5JTZ9 985 aaKnown RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 ICE2Q659A1 982 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 KCTD11Q693B1 232 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 PRSS41Q7RTY9 318 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 LDB1Q86U70 411 aaPredicted RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 PLD3Q8IV08 490 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 SULF2Q8IWU5 870 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 SHISA5Q8N114 240 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 CYP4X1Q8N118 509 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 KIF2BQ8N4N8 673 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 ARHGEF39Q8N4T4 335 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 OR52N2Q8NGI0 321 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 OR5M9Q8NGP3 310 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 OR13J1Q8NGT2 312 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 OR9A1PQ8NGU1 263 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 SPATA3Q8NHX4 192 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 MBD6Q96DN6 1003 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 CCDC42Q96M95 316 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 PANX3Q96QZ0 392 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 RBCK1Q9BYM8 510 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 ZNF395Q9H8N7 513 aaPredicted RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 ZNHIT6Q9NWK9 470 aaKnown RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 SLC2A6Q9UGQ3 507 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 R3HDM2Q9Y2K5 976 aaKnown RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 DUSP10Q9Y6W6 482 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 SONP18583 2426 aaKnown RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 HRNRQ86YZ3 2850 aaPredicted RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 NINQ8N4C6 2090 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 IGKV1-8A0A0C4DH67 115 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 FAM171A2A8MVW0 826 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 SGK494L7N484 410 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 FCHO1O14526 889 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 HAT1O14929 419 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 PSMD3O43242 534 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 RDH16O75452 317 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 RAF1P04049 648 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 HEXAP06865 529 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 PSMA3P25788 255 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 ACVR2AP27037 513 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 PCSK6P29122 969 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 UQCRC1P31930 480 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 BCL6P41182 706 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 MLF1P58340 268 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 GPR85P60893 370 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 SNRPNP63162 240 aaKnown RBP6.86□□□□□ -1.31
VPS4A-203ENST00000564399 PLGLB1Q02325 96 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 SEMA3AQ14563 771 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 DEFB113Q30KQ7 82 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 EMC4Q5J8M3 183 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 TSTD2Q5T7W7 516 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 THEMIS2Q5TEJ8 643 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 MEI1Q5TIA1 1274 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 ZNF425Q6IV72 752 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 ZNF585AQ6P3V2 769 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 PAMR1Q6UXH9 720 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 ZNF534Q76KX8 674 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 CXXC5Q7LFL8 322 aaKnown RBP6.86□□□□□ -1.31
VPS4A-203ENST00000564399 WDR53Q7Z5U6 358 aaPredicted RBP6.86□□□□□ -1.31
VPS4A-203ENST00000564399 LINC00523Q86TU6 105 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 ZNF227Q86WZ6 799 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 TMEM156Q8N614 296 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 PLPP5Q8NEB5 264 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 OR8K1Q8NGG5 319 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 OR52K1Q8NGK4 314 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 C16orf52Q8NHV5 167 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 ZCCHC10Q8TBK6 192 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 ELP5Q8TE02 316 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 KRT35Q92764 455 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 TSLPQ969D9 159 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 ARSGQ96EG1 525 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 PEX11GQ96HA9 241 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 MACROD1Q9BQ69 325 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 TTYH2Q9BSA4 534 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 DEFB126Q9BYW3 111 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 ANKHQ9HCJ1 492 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 NEUROD4Q9HD90 331 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 PNPLA3Q9NST1 481 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 CRIM1Q9NZV1 1036 aa6.86□□□□□ -1.31
VPS4A-203ENST00000564399 FIGNL2A6NMB9 653 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 A6NNC1 897 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 ZNF839A8K0R7 811 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 FAM166BA8MTA8 275 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 ARHGEF33A8MVX0 844 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 MAGEB17A8MXT2 336 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 H7BY64 318 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 PJA2O43164 708 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 NDUFS3O75489 264 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 ZNF189O75820 626 aaPredicted RBP6.85□□□□□ -1.31
VPS4A-203ENST00000564399 METTL18O95568 372 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 LY6G6DO95868 133 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 TRHRP34981 398 aaPredicted RBP6.85□□□□□ -1.31
VPS4A-203ENST00000564399 PEX19P40855 299 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 CETN2P41208 172 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 TTPAP49638 278 aa6.85□□□□□ -1.31
VPS4A-203ENST00000564399 NR0B1P51843 470 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms