RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 C1GALT1C1LP0DN25 315 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 TFEBP19484 476 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 GSTM2P28161 218 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 TYK2P29597 1187 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 ECHS1P30084 290 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 MSH2P43246 934 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 SLC6A12P48065 614 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 PGDP52209 483 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 REEP5Q00765 189 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 KLC1Q07866 573 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 CDC16Q13042 620 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 CHAF1BQ13112 559 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 HERC3Q15034 1050 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 DCAF10Q5QP82 559 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 CATSPEREQ5SY80 951 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 CPZQ66K79 652 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 TMEM214Q6NUQ4 689 aaKnown RBP12.72□□□□□ -0.37
CLK3-213ENST00000563842 KLC3Q6P597 504 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 PPP1R32Q7Z5V6 425 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 KRT78Q8N1N4 520 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 ARHGEF39Q8N4T4 335 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 PDPRQ8NCN5 879 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 TTLQ8NG68 377 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 RHEBL1Q8TAI7 183 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 SLC44A1Q8WWI5 657 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 TSNARE1Q96NA8 513 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 TRIM55Q9BYV6 548 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 TGIF2Q9GZN2 237 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 PITHD1Q9GZP4 211 aaPredicted RBP12.72□□□□□ -0.37
CLK3-213ENST00000563842 SYNPO2LQ9H987 977 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 ATP13A2Q9NQ11 1180 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 DNAJC11Q9NVH1 559 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 NUDT4Q9NZJ9 180 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 ZFP69BQ9UJL9 534 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 NFU1Q9UMS0 254 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 ZNF451Q9Y4E5 1061 aa12.72□□□□□ -0.37
CLK3-213ENST00000563842 ZNF462Q96JM2 2506 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 NDUFS4O43181 175 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 KERAO60938 352 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 DNAJB5O75953 348 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 C2P06681 752 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 CYC1P08574 325 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 RHOXF2BP0C7M4 288 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 HPDP32754 393 aaPredicted RBP12.71□□□□□ -0.37
CLK3-213ENST00000563842 SCTRP47872 440 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 EMP2P54851 167 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 MEF2AQ02078 507 aaPredicted RBP12.71□□□□□ -0.37
CLK3-213ENST00000563842 KLRB1Q12918 225 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 AIMP2Q13155 320 aaKnown RBP12.71□□□□□ -0.37
CLK3-213ENST00000563842 BMPR2Q13873 1038 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 ACAP2Q15057 778 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 OR4D1Q15615 310 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 LGSNQ5TDP6 509 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 IRAK1BP1Q5VVH5 260 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 ATG14Q6ZNE5 492 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 ASB18Q6ZVZ8 466 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 TRMT10CQ7L0Y3 403 aaKnown RBP12.71□□□□□ -0.37
CLK3-213ENST00000563842 ISCA2Q86U28 154 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 DTWD1Q8N5C7 304 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 EIF1ADQ8N9N8 165 aaKnown RBP12.71□□□□□ -0.37
CLK3-213ENST00000563842 TEX19Q8NA77 164 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 NT5CQ8TCD5 201 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 SEC16BQ96JE7 1060 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 PAFAH2Q99487 392 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 RHOXF2Q9BQY4 288 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 EHD1Q9H4M9 534 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 ALG9Q9H6U8 611 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 SNX15Q9NRS6 342 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 GPR83Q9NYM4 423 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 ZNF180Q9UJW8 692 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 C3orf18Q9UK00 162 aa12.71□□□□□ -0.37
CLK3-213ENST00000563842 PTBP2Q9UKA9 531 aaKnown RBP12.71□□□□□ -0.37
CLK3-213ENST00000563842 CFAP46Q8IYW2 2715 aa12.71□□□□□ -0.38
CLK3-213ENST00000563842 BOD1L1Q8NFC6 3051 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 A0A096LPK6 155 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 SUPT3HB4E1H0 165 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 POC1B-GALNT4F8VUJ3 575 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 MAP2K7O14733 419 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 TAPBPO15533 448 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 SUV39H1O43463 412 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 SLC28A2O43868 658 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 SUPT3HO75486 399 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 KLHL2O95198 593 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 ALPPP05187 535 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 SERPIND1P05546 499 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 HEXBP07686 556 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 ABHD2P08910 425 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 IL10P22301 178 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 GDF5P43026 501 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 HSPA7P48741 367 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 SOX8P57073 446 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 LAPTM5Q13571 262 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 RBBP5Q15291 538 aaKnown RBP12.7□□□□□ -0.38
CLK3-213ENST00000563842 PDK4Q16654 411 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 TUBB8Q3ZCM7 444 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 VWA2Q5GFL6 755 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 ATG9BQ674R7 924 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 SHISA6Q6ZSJ9 500 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 ABHD13Q7L211 337 aa12.7□□□□□ -0.38
CLK3-213ENST00000563842 LRRC70Q7Z2Q7 622 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms