RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TIGD3Q6B0B8 471 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 C16orf59Q7L2K0 433 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 CCDC71Q8IV32 467 aaPredicted RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 CFAP52Q8N1V2 620 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 DNAJA4Q8WW22 397 aaPredicted RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 DNASE1L2Q92874 299 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 RHBDF1Q96CC6 855 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 ASIC4Q96FT7 647 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 DCLRE1CQ96SD1 692 aaKnown RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 GTPBP2Q9BX10 602 aaKnown RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 PPIL3Q9H2H8 161 aaKnown RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 MRM3Q9HC36 420 aaKnown RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 SLC35C2Q9NQQ7 365 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 MRPL39Q9NYK5 338 aaKnown RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 GBF1Q92538 1859 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 A0A087X1B8 175 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 A0A1B0GTL3 188 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 WBP4O75554 376 aaKnown RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 ZDHHC11BP0C7U3 371 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 PAMP19021 973 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 TACR2P21452 398 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 EVI2BP34910 448 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 OR1D2P34982 312 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 KPNA2P52292 529 aaKnown RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 GPR85P60893 370 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 RING1Q06587 406 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 MADCAM1Q13477 382 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 SEMA3AQ14563 771 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 UGP2Q16851 508 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 FLYWCH1Q4VC44 716 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 ZC3H12BQ5HYM0 836 aaKnown RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 TEX261Q6UWH6 196 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 METTL3Q86U44 580 aaKnown RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 PGBD5Q8N414 524 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 C9orf62Q8N4C0 152 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 OR52H1Q8NGJ2 320 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 ANKRD49Q8WVL7 239 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 MAGEB10Q96LZ2 347 aaPredicted RBP12.86□□□□□ -0.35
CLK3-206ENST00000562078 VN1R3Q9BXE9 311 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 ALG9Q9H6U8 611 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 ASAH2Q9NR71 780 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 U3KQ87 197 aa12.86□□□□□ -0.35
CLK3-206ENST00000562078 DRGXA6NNA5 263 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 SIX3O95343 332 aaPredicted RBP12.85□□□□□ -0.35
CLK3-206ENST00000562078 HSMCR30P0CW71 290 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 ALAS2P22557 587 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 HLA-DMAP28067 261 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 POLR2JP52435 117 aaKnown RBP12.85□□□□□ -0.35
CLK3-206ENST00000562078 MAP2K6P52564 334 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 CYP4F2P78329 520 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 CYP4F3Q08477 520 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 SERINC3Q13530 473 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 CYP27C1Q4G0S4 372 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 KIAA0930Q6ICG6 404 aaPredicted RBP12.85□□□□□ -0.35
CLK3-206ENST00000562078 LAX1Q8IWV1 398 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 ADHFE1Q8IWW8 467 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 SLC39A11Q8N1S5 342 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 ZNF680Q8NEM1 530 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 C2orf15Q8WU43 125 aaKnown RBP12.85□□□□□ -0.35
CLK3-206ENST00000562078 FATE1Q969F0 183 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 NSUN5Q96P11 429 aaKnown RBP12.85□□□□□ -0.35
CLK3-206ENST00000562078 COPS4Q9BT78 406 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 SRRQ9GZT4 340 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 SPNS1Q9H2V7 528 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 SMURF1Q9HCE7 757 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 UXTQ9UBK9 157 aaPredicted RBP12.85□□□□□ -0.35
CLK3-206ENST00000562078 ELF5Q9UKW6 265 aaPredicted RBP12.85□□□□□ -0.35
CLK3-206ENST00000562078 ALG5Q9Y673 324 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 A0A1W2PRG6 482 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 F5H5T6 163 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 NUPL2O15504 423 aaKnown RBP12.85□□□□□ -0.35
CLK3-206ENST00000562078 SGTAO43765 313 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 PCDHGA12O60330 932 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 SOD2P04179 222 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 EFNA1P20827 205 aaPredicted RBP12.85□□□□□ -0.35
CLK3-206ENST00000562078 SLC6A4P31645 630 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 CLCN7P51798 805 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 CREMQ03060 361 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 SCN1BQ07699 218 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 RFX4Q33E94 735 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 TEX26Q8N6G2 289 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 PAF1Q8N7H5 531 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 ZNF366Q8N895 744 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 BLOC1S5Q8TDH9 187 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 ZNF578Q96N58 590 aaPredicted RBP12.85□□□□□ -0.35
CLK3-206ENST00000562078 PRKD2Q9BZL6 878 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 ATP13A1Q9HD20 1204 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 SPG21Q9NZD8 308 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 ZNF175Q9Y473 711 aa12.85□□□□□ -0.35
CLK3-206ENST00000562078 DNMT3AQ9Y6K1 912 aaPredicted RBP12.85□□□□□ -0.35
CLK3-206ENST00000562078 AZIN1O14977 448 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 GSTA4O15217 222 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 SLC22A3O75751 556 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 GJB5O95377 273 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 CHMP24386 653 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 DAPP51397 102 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 LIMK1P53667 647 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 IL10RBQ08334 325 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 ASAH1Q13510 395 aa12.84□□□□□ -0.35
CLK3-206ENST00000562078 GPR19Q15760 415 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms