RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 IKZF3Q9UKT9 509 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 OSGIN2Q9Y236 505 aa9.67□□□□□ -0.86
LDLR-214ENST00000560628 SCN3AQ9NY46 2000 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 A0A1W2PQ72 361 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 PABPN1LA6NDY0 278 aaKnown RBP9.66□□□□□ -0.86
LDLR-214ENST00000560628 WIPF3A6NGB9 483 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 ZNF860A6NHJ4 632 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 E2F3O00716 465 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 TTI1O43156 1089 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 OR1F1O43749 312 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 DNAJB6O75190 326 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 RDH16O75452 317 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 CLDN1O95832 211 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 WDPCPO95876 746 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 B3GALT4O96024 378 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 SERPIND1P05546 499 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 ICAM2P13598 275 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 FDXRP22570 491 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 CCND1P24385 295 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 ST13P50502 369 aaKnown RBP9.66□□□□□ -0.86
LDLR-214ENST00000560628 TNFSF10P50591 281 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 CCR8P51685 355 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 MRPS25P82663 173 aaKnown RBP9.66□□□□□ -0.86
LDLR-214ENST00000560628 SP140Q13342 867 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 CATSPEREQ5SY80 951 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 DUPD1Q68J44 220 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 FCRLBQ6BAA4 426 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 HIBCHQ6NVY1 386 aaPredicted RBP9.66□□□□□ -0.86
LDLR-214ENST00000560628 FAM180AQ6UWF9 173 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 TMEM207Q6UWW9 146 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 SYDE1Q6ZW31 735 aaPredicted RBP9.66□□□□□ -0.86
LDLR-214ENST00000560628 CPEB2Q7Z5Q1 589 aaKnown RBP9.66□□□□□ -0.86
LDLR-214ENST00000560628 PDSS2Q86YH6 399 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 MFSD9Q8NBP5 474 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 ZNF740Q8NDX6 193 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 OR5T3Q8NGG3 340 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 OR56A3Q8NH54 315 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 PEX11GQ96HA9 241 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 HAUS8Q9BT25 410 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 RBCK1Q9BYM8 510 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 NAALAD2Q9Y3Q0 740 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 PSAT1Q9Y617 370 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 TEX264Q9Y6I9 313 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 NUP210LQ5VU65 1888 aa9.66□□□□□ -0.86
LDLR-214ENST00000560628 HIVEP3Q5T1R4 2406 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 SPTBN1Q01082 2364 aaKnown RBP9.65□□□□□ -0.86
LDLR-214ENST00000560628 TRAV17A0A0B4J275 112 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 CDC7O00311 574 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 PCDH17O14917 1159 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 LRRTM2O43300 516 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 CDC123O75794 336 aaPredicted RBP9.65□□□□□ -0.86
LDLR-214ENST00000560628 PIAS1O75925 651 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 EDN3P14138 238 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 ARL4CP56559 192 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 OLR1P78380 273 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 ZNF33BQ06732 778 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 ACTN3Q08043 901 aaPredicted RBP9.65□□□□□ -0.86
LDLR-214ENST00000560628 PDIA2Q13087 525 aaKnown RBP9.65□□□□□ -0.86
LDLR-214ENST00000560628 CSHL1Q14406 222 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 ZNF460Q14592 562 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 FASTKD3Q14CZ7 662 aaKnown RBP9.65□□□□□ -0.86
LDLR-214ENST00000560628 BTBD16Q32M84 506 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 ABHD17BQ5VST6 288 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 STEAP4Q687X5 459 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 FAM45BPQ6NSW5 357 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 RPUSD3Q6P087 351 aaKnown RBP9.65□□□□□ -0.86
LDLR-214ENST00000560628 RIPOR1Q6ZS17 1223 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 MAMDC2Q7Z304 686 aaPredicted RBP9.65□□□□□ -0.86
LDLR-214ENST00000560628 ANKRD37Q7Z713 158 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 STRA8Q7Z7C7 330 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 GALNT7Q86SF2 657 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 BCORP1Q8N888 145 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 ABHD11Q8NFV4 315 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 OR4K1Q8NGD4 311 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 FAM45AQ8TCE6 357 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 NEIL2Q969S2 332 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 FBXL8Q96CD0 374 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 TSNARE1Q96NA8 513 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 TAAR6Q96RI8 345 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 TUBB6Q9BUF5 446 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 OLAHQ9NV23 265 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 SNX24Q9Y343 169 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 SAR1BQ9Y6B6 198 aa9.65□□□□□ -0.86
LDLR-214ENST00000560628 MAST4O15021 2626 aa9.65□□□□□ -0.87
LDLR-214ENST00000560628 SPTAN1Q13813 2472 aaKnown RBP9.64□□□□□ -0.87
LDLR-214ENST00000560628 TRBC2A0A5B9 178 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 CTAGE15A4D2H0 777 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 NPEPPSL1A6NEC2 478 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 EFCAB8A8MWE9 144 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 TP73O15350 636 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 NDUFS4O43181 175 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 CHST10O43529 356 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 SEC31AO94979 1220 aaKnown RBP9.64□□□□□ -0.87
LDLR-214ENST00000560628 SLC35G6P0C7Q6 338 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 HNF4AP41235 474 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 PAFAH1B1P43034 410 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 RPL21P46778 160 aaKnown RBP9.64□□□□□ -0.87
LDLR-214ENST00000560628 AP1S2P56377 157 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 KCNK10P57789 538 aa9.64□□□□□ -0.87
LDLR-214ENST00000560628 TAS2R39P59534 338 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms