RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 MTBPQ96DY7 904 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 CABS1Q96KC9 395 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 SPNS1Q9H2V7 528 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 DNAJC11Q9NVH1 559 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 IFT80Q9P2H3 777 aaPredicted RBP8.92□□□□□ -0.98
LDLR-211ENST00000560173 PSMC3IPQ9P2W1 217 aaPredicted RBP8.92□□□□□ -0.98
LDLR-211ENST00000560173 NDOR1Q9UHB4 597 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 TCFL5Q9UL49 500 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 ASB1Q9Y576 335 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 SYCE1LA8MT33 242 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 ERVH48-1M5A8F1 160 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 AGPSO00116 658 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 KLK8O60259 260 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 LCMT2O60294 686 aaKnown RBP8.91□□□□□ -0.98
LDLR-211ENST00000560173 RFPL1O75677 317 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 KLF7O75840 302 aaPredicted RBP8.91□□□□□ -0.98
LDLR-211ENST00000560173 SHBGP04278 402 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 FURINP09958 794 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 COL6A2P12110 1019 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 GNAZP19086 355 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 VARSP26640 1264 aaKnown RBP8.91□□□□□ -0.98
LDLR-211ENST00000560173 SCTRP47872 440 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 OR1D4P47884 311 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 SNRPNP63162 240 aaKnown RBP8.91□□□□□ -0.98
LDLR-211ENST00000560173 ERV3-1Q14264 604 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 TBR1Q16650 682 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 PDK4Q16654 411 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 UGT8Q16880 541 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 TSNAXIP1Q2TAA8 658 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 TECRLQ5HYJ1 363 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 CEP85LQ5SZL2 805 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 LGSNQ5TDP6 509 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 MLIPQ5VWP3 458 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 PRMT9Q6P2P2 845 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 C16orf46Q6P387 395 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 PCSK4Q6UW60 755 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 LRRC70Q7Z2Q7 622 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 ASPGQ86U10 573 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 RIBC1Q8N443 379 aaPredicted RBP8.91□□□□□ -0.98
LDLR-211ENST00000560173 METTL27Q8N6F8 245 aaPredicted RBP8.91□□□□□ -0.98
LDLR-211ENST00000560173 MZB1Q8WU39 189 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 ESAMQ96AP7 390 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 TM4SF19Q96DZ7 209 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 MVB12AQ96EY5 273 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 CATSPER2Q96P56 530 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 CD244Q9BZW8 370 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 SLC26A1Q9H2B4 701 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 EHD1Q9H4M9 534 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 ZNF358Q9NW07 568 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 GEMIN8Q9NWZ8 242 aaKnown RBP8.91□□□□□ -0.98
LDLR-211ENST00000560173 PSD3Q9NYI0 1048 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 GPRC5BQ9NZH0 403 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 GPN3Q9UHW5 284 aaPredicted RBP8.91□□□□□ -0.98
LDLR-211ENST00000560173 PADI2Q9Y2J8 665 aa8.91□□□□□ -0.98
LDLR-211ENST00000560173 MRPS2Q9Y399 296 aaKnown RBP8.91□□□□□ -0.98
LDLR-211ENST00000560173 IQANK1A0A1B0GTG1 560 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 CDC14CA4D256 554 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 H3BQF6 201 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 POLR3GO15318 223 aaPredicted RBP8.9□□□□□ -0.98
LDLR-211ENST00000560173 FOXS1O43638 330 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 OR1F1O43749 312 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 PRAMEF4O60810 478 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 ALBP02768 609 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 ATXN8OSP0DMR3 200 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 C1GALT1C1LP0DN25 315 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 PIM1P11309 404 aaPredicted RBP8.9□□□□□ -0.98
LDLR-211ENST00000560173 EPORP19235 508 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 FBLP22087 321 aaKnown RBP8.9□□□□□ -0.98
LDLR-211ENST00000560173 AHRP35869 848 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 AGTR2P50052 363 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 FOXL2P58012 376 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 PWP1Q13610 501 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 DSG2Q14126 1118 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 FAM53BQ14153 422 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 SLBPQ14493 270 aaKnown RBP eCLIP8.9□□□□□ -0.98
LDLR-211ENST00000560173 SETDB1Q15047 1291 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 DEFB109BQ30KR1 87 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 LINC00303Q3SY05 128 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 KRT71Q3SY84 523 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 PRAMEF9Q5VWM5 478 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 ATG9BQ674R7 924 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 TMEM214Q6NUQ4 689 aaKnown RBP8.9□□□□□ -0.98
LDLR-211ENST00000560173 BORAQ6PGQ7 559 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 OVCH1Q7RTY7 1134 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 TDRPQ86YL5 185 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 TMEM151BQ8IW70 566 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 TBC1D19Q8N5T2 526 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 SNX31Q8N9S9 440 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 ANKRD53Q8N9V6 530 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 CAMKVQ8NCB2 501 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 OR2Y1Q8NGV0 311 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 ADAMTS17Q8TE56 1095 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 SLC13A3Q8WWT9 602 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 EXTL1Q92935 676 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 WDR34Q96EX3 536 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 PGM2Q96G03 612 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 WBP1Q96G27 269 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 ATP6V1G3Q96LB4 118 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 MACROD1Q9BQ69 325 aa8.9□□□□□ -0.98
LDLR-211ENST00000560173 AIF1LQ9BQI0 150 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms