RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 NDRG4Q9ULP0 352 aaKnown RBP10.96□□□□□ -0.66
LDLR-208ENST00000558518 PCDHB5Q9Y5E4 795 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 FAM220BPB1ANY3 271 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 TNFRSF10BO14763 440 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 PCDH17O14917 1159 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 PCDH7O60245 1069 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 PLOD3O60568 738 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 HOXC13P31276 330 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 PPIGQ13427 754 aaKnown RBP eCLIP10.95□□□□□ -0.663e-7■■□□□ 11.4
LDLR-208ENST00000558518 TUSC3Q13454 348 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 GDF6Q6KF10 455 aaPredicted RBP10.95□□□□□ -0.66
LDLR-208ENST00000558518 LIMS2Q7Z4I7 341 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 ZNF438Q7Z4V0 828 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 IPCEF1Q8WWN9 437 aaPredicted RBP10.95□□□□□ -0.66
LDLR-208ENST00000558518 SNAPC3Q92966 411 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 C1GALT1C1Q96EU7 318 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 OTUB1Q96FW1 271 aaPredicted RBP10.95□□□□□ -0.66
LDLR-208ENST00000558518 KCNH6Q9H252 994 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 SMURF1Q9HCE7 757 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 CCDC177Q9NQR7 707 aaPredicted RBP10.95□□□□□ -0.66
LDLR-208ENST00000558518 FLRT1Q9NZU1 646 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 CLEC4AQ9UMR7 237 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 HSPB11Q9Y547 144 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 GSAPA4D1B5 854 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 CHI3L1P36222 383 aaPredicted RBP10.95□□□□□ -0.66
LDLR-208ENST00000558518 RPS19P39019 145 aaKnown RBP10.95□□□□□ -0.66
LDLR-208ENST00000558518 RPS26P62854 115 aaKnown RBP10.95□□□□□ -0.66
LDLR-208ENST00000558518 CAMK2BQ13554 666 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 XKR4Q5GH76 650 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 SHFQ7M4L6 423 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 SLC46A3Q7Z3Q1 461 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 BBS7Q8IWZ6 715 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 OR7G1Q8NGA0 311 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 TRIB2Q92519 343 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 CCDC115Q96NT0 180 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 POLR2J2Q9GZM3 115 aaKnown RBP10.95□□□□□ -0.66
LDLR-208ENST00000558518 TRPV2Q9Y5S1 764 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 FAM172BPA6NC97 362 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 FABP12A6NFH5 140 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 ARHGAP33O14559 1287 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 SLITRK5O94991 958 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 KCNK5O95279 499 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 TYMPP19971 482 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 HOXD9P28356 352 aaPredicted RBP10.95□□□□□ -0.66
LDLR-208ENST00000558518 STARD3Q14849 445 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 KIAA0040Q15053 153 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 ZNF57Q68EA5 555 aaPredicted RBP10.95□□□□□ -0.66
LDLR-208ENST00000558518 NOXRED1Q6NXP6 359 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 TMIGD1Q6UXZ0 262 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 TSPAN33Q86UF1 283 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 DNAJC22Q8N4W6 341 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 AQP11Q8NBQ7 271 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 OR4A15Q8NGL6 344 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 ZFYVE1Q9HBF4 777 aa10.95□□□□□ -0.66
LDLR-208ENST00000558518 TANC1Q9C0D5 1861 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 OR2AG2A6NM03 316 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 CLDN24A6NM45 220 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 ICMTO60725 284 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 MYCP01106 439 aaPredicted RBP10.94□□□□□ -0.66
LDLR-208ENST00000558518 RPL9P32969 192 aaKnown RBP10.94□□□□□ -0.66
LDLR-208ENST00000558518 CPT1AP50416 773 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 GPLD1P80108 840 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 DBPQ10586 325 aaPredicted RBP10.94□□□□□ -0.66
LDLR-208ENST00000558518 HNRNPA0Q13151 305 aaKnown RBP10.94□□□□□ -0.66
LDLR-208ENST00000558518 KRR1Q13601 381 aaKnown RBP10.94□□□□□ -0.66
LDLR-208ENST00000558518 KEAP1Q14145 624 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 AFMIDQ63HM1 303 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 C22orf42Q6IC83 251 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 ZSWIM9Q86XI8 627 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 REM2Q8IYK8 340 aaPredicted RBP10.94□□□□□ -0.66
LDLR-208ENST00000558518 NFKBIDQ8NI38 313 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 JPH3Q8WXH2 748 aaPredicted RBP10.94□□□□□ -0.66
LDLR-208ENST00000558518 ZNF717Q9BY31 904 aaPredicted RBP10.94□□□□□ -0.66
LDLR-208ENST00000558518 SERHLQ9NQF3 203 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 YARS2Q9Y2Z4 477 aaKnown RBP10.94□□□□□ -0.66
LDLR-208ENST00000558518 MBLAC1A4D2B0 266 aaPredicted RBP10.94□□□□□ -0.66
LDLR-208ENST00000558518 TBKBP1A7MCY6 615 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 DNAJB5O75953 348 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 CDK1P06493 297 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 UQCRC1P31930 480 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 CNR2P34972 360 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 SLC11A2P49281 568 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 E2F2Q14209 437 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 BTBD16Q32M84 506 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 GLB1LQ6UWU2 654 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 ZNF852Q6ZMS4 543 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 TPGS1Q6ZTW0 290 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 GPC2Q8N158 579 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 IQCF1Q8N6M8 205 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 OR5H6Q8NGV6 325 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 CCDC120Q96HB5 630 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 ART5Q96L15 291 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 COL21A1Q96P44 957 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 PSORS1C1Q9UIG5 152 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 PAPPA2Q9BXP8 1791 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 TNFRSF10AO00220 468 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 JUNDP17535 347 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 CBLP22681 906 aa10.94□□□□□ -0.66
LDLR-208ENST00000558518 CORO1AP31146 461 aaKnown RBP10.94□□□□□ -0.66
LDLR-208ENST00000558518 GNG2P59768 71 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms