RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CCR7P32248 378 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 HNF1BP35680 557 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 RPS26P62854 115 aaKnown RBP11.91□□□□□ -0.5
LDLR-205ENST00000557933 MC1RQ01726 317 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 LRRC26Q2I0M4 334 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 EXOC3L2Q2M3D2 409 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 RFX4Q33E94 735 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 SPANXN2Q5MJ10 180 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 LYPD8Q6UX82 237 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 OLIG3Q7RTU3 272 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 TSPYL5Q86VY4 417 aaPredicted RBP11.91□□□□□ -0.5
LDLR-205ENST00000557933 NLRP8Q86W28 1048 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 LAX1Q8IWV1 398 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 C2orf73Q8N5S3 287 aaPredicted RBP11.91□□□□□ -0.5
LDLR-205ENST00000557933 AADATQ8N5Z0 425 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 GPR26Q8NDV2 337 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 GPR151Q8TDV0 419 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 UBASH3BQ8TF42 649 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 SMAD5Q99717 465 aaKnown RBP11.91□□□□□ -0.5
LDLR-205ENST00000557933 P2RY13Q9BPV8 354 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 MAGEH1Q9H213 219 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 ABCB9Q9NP78 766 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 CTPS2Q9NRF8 586 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 MAP4K5Q9Y4K4 846 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 TDRD15B5MCY1 1934 aaKnown RBP11.91□□□□□ -0.5
LDLR-205ENST00000557933 PCM1Q15154 2024 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 DYTNA2CJ06 578 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 HLA-EP13747 358 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 PTGER1P34995 402 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 CSKP41240 450 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 SLC11A2P49281 568 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 CAV3P56539 151 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 CLDN8P56748 225 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 CD83Q01151 205 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 MEF2AQ02078 507 aaPredicted RBP11.9□□□□□ -0.5
LDLR-205ENST00000557933 LRRC74AQ0VAA2 488 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 PLD1Q13393 1074 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 PROX2Q3B8N5 592 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 CXorf57Q6NSI4 855 aaKnown RBP11.9□□□□□ -0.5
LDLR-205ENST00000557933 TSEN54Q7Z6J9 526 aaKnown RBP11.9□□□□□ -0.5
LDLR-205ENST00000557933 MMP21Q8N119 569 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 AMER2Q8N7J2 671 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 TP53I13Q8NBR0 393 aaPredicted RBP11.9□□□□□ -0.5
LDLR-205ENST00000557933 ST13P5Q8NFI4 369 aaPredicted RBP11.9□□□□□ -0.5
LDLR-205ENST00000557933 B3GNT7Q8NFL0 401 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 OTUB1Q96FW1 271 aaPredicted RBP11.9□□□□□ -0.5
LDLR-205ENST00000557933 TRMT61AQ96FX7 289 aaKnown RBP11.9□□□□□ -0.5
LDLR-205ENST00000557933 MYO19Q96H55 970 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 OARD1Q9Y530 152 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 NLRC5Q86WI3 1866 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 CHD5Q8TDI0 1954 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 GLYATL1P3A0A0U1RQE8 302 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 GNG14A0A1W2PPG7 69 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 TMEM202A6NGA9 273 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 PRKAR2AP13861 404 aaKnown RBP11.9□□□□□ -0.5
LDLR-205ENST00000557933 PTNP21246 168 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 DGKAP23743 735 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 ABRQ12979 859 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 DSC3Q14574 896 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 BAK1Q16611 211 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 ATP13A5Q4VNC0 1218 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 MRPL10Q7Z7H8 261 aaKnown RBP11.9□□□□□ -0.5
LDLR-205ENST00000557933 SLC43A3Q8NBI5 491 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 OR10G2Q8NGC3 310 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 WDR36Q8NI36 951 aaKnown RBP11.9□□□□□ -0.5
LDLR-205ENST00000557933 SDHCQ99643 169 aaPredicted RBP11.9□□□□□ -0.5
LDLR-205ENST00000557933 DNAJC27Q9NZQ0 273 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 IFT52Q9Y366 437 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 PCDHGB1Q9Y5G3 927 aa11.9□□□□□ -0.5
LDLR-205ENST00000557933 PRAMEF25A6NGN4 478 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 NPIPB15A6NHN6 443 aaPredicted RBP11.9□□□□□ -0.51
LDLR-205ENST00000557933 SUV39H1O43463 412 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 TRBC1P01850 177 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 RPLP0P05388 317 aaKnown RBP11.9□□□□□ -0.51
LDLR-205ENST00000557933 ANXA5P08758 320 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 CD22P20273 847 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 HMGCLP35914 325 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 MAGEA2P43356 314 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 RGS6P49758 472 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 RAB25P57735 213 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 PAMR1Q6UXH9 720 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 ZNF605Q86T29 641 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 LGI4Q8N135 537 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 FBLIM1Q8WUP2 373 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 ZNF296Q8WUU4 475 aaPredicted RBP11.9□□□□□ -0.51
LDLR-205ENST00000557933 LINC01599Q8WXQ3 324 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 PEX13Q92968 403 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 SCAMP4Q969E2 229 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 ZNF566Q969W8 418 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 PDLIM5Q96HC4 596 aaKnown RBP11.9□□□□□ -0.51
LDLR-205ENST00000557933 TXNDC15Q96J42 360 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 C8orf48Q96LL4 319 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 CITED4Q96RK1 184 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 PKP4Q99569 1192 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 NRTNQ99748 197 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 VPS9D1Q9Y2B5 631 aa11.9□□□□□ -0.51
LDLR-205ENST00000557933 SMLR1H3BR10 107 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 CCRL2O00421 344 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 WNT9AO14904 365 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 ZW10O43264 779 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms