RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 OR4C15Q8NGM1 316 aa15.71■□□□□ 0.11
SHMT2-231ENST00000557433 SNX18Q96RF0 628 aa15.71■□□□□ 0.11
SHMT2-231ENST00000557433 FEVQ99581 238 aa15.71■□□□□ 0.11
SHMT2-231ENST00000557433 ZNF556Q9HAH1 456 aa15.71■□□□□ 0.11
SHMT2-231ENST00000557433 BRF2Q9HAW0 419 aa15.71■□□□□ 0.11
SHMT2-231ENST00000557433 NEK6Q9HC98 313 aa15.71■□□□□ 0.11
SHMT2-231ENST00000557433 SPATA6Q9NWH7 488 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-231ENST00000557433 MARCH5Q9NX47 278 aa15.71■□□□□ 0.11
SHMT2-231ENST00000557433 VPS4AQ9UN37 437 aa15.71■□□□□ 0.11
SHMT2-231ENST00000557433 SCN8AQ9UQD0 1980 aa15.71■□□□□ 0.11
SHMT2-231ENST00000557433 C1orf226A1L170 272 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 GFYI3L273 518 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 TLL1O43897 1013 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 TBL1XO60907 577 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 VIPP01282 170 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 RGNQ15493 299 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 MICAQ29983 383 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 IFI44LQ53G44 452 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 GDPD3Q7L5L3 318 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 NLRP8Q86W28 1048 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 ADGRG2Q8IZP9 1017 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 PCSK9Q8NBP7 692 aaKnown RBP15.7■□□□□ 0.1
SHMT2-231ENST00000557433 FAM83FQ8NEG4 500 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-231ENST00000557433 IL17RDQ8NFM7 739 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 MAPKAP1Q9BPZ7 522 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 TTPALQ9BTX7 342 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 TPK1Q9H3S4 243 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 CCDC177Q9NQR7 707 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-231ENST00000557433 IMPAD1Q9NX62 359 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 EHD3Q9NZN3 535 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 NDUFAF4Q9P032 175 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 ARRDC5A6NEK1 342 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 MANSC4A6NHS7 340 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-231ENST00000557433 PDZK1P1A8MUH7 402 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 CENPBD1B2RD01 187 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 KMOO15229 486 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 CCNKO75909 580 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 CD72P21854 359 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 CCR7P32248 378 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 PCDH1Q08174 1060 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 ACSM2AQ08AH3 577 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 CHIT1Q13231 466 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 MBTPS1Q14703 1052 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 SF3B4Q15427 424 aaKnown RBP eCLIP15.7■□□□□ 0.13e-8■■■■■ 35.5
SHMT2-231ENST00000557433 CPTPQ5TA50 214 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 ACSM2BQ68CK6 577 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 THOC7Q6I9Y2 204 aaKnown RBP15.7■□□□□ 0.1
SHMT2-231ENST00000557433 GDPGP1Q6ZNW5 385 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 ALG14Q96F25 216 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 DPH2Q9BQC3 489 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-231ENST00000557433 CLSTN3Q9BQT9 956 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 DYRK4Q9NR20 520 aa15.7■□□□□ 0.1
SHMT2-231ENST00000557433 WBP11Q9Y2W2 641 aaKnown RBP15.7■□□□□ 0.1
SHMT2-231ENST00000557433 LOC100506127A0A0U1RQW1 187 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 CXorf51AA0A1B0GTR3 108 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 PSMD11O00231 422 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 NBNO60934 754 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 IGSF6O95976 241 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 IFNA14P01570 189 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 SRPRAP08240 638 aaKnown RBP15.69■□□□□ 0.1
SHMT2-231ENST00000557433 TRAPPC2P0DI81 140 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 TRAPPC2BP0DI82 140 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 PIPP12273 146 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-231ENST00000557433 SPNP16150 400 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 GTF2E2P29084 291 aaKnown RBP15.69■□□□□ 0.1
SHMT2-231ENST00000557433 SERPINA4P29622 427 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 HNF4AP41235 474 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 CDC42P60953 191 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 IFITM2Q01629 132 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 ST3GAL4Q11206 333 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 RTP2Q5QGT7 225 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 RSBN1Q5VWQ0 802 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-231ENST00000557433 CCSAPQ6IQ19 270 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-231ENST00000557433 NPAS3Q8IXF0 933 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 SLC5A8Q8N695 610 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 WDR20Q8TBZ3 569 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 SPPL2AQ8TCT8 520 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 COQ8BQ96D53 544 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 C11orf24Q96F05 449 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-231ENST00000557433 CEP19Q96LK0 163 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 SLC30A2Q9BRI3 323 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 TMEM175Q9BSA9 504 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 EBPLQ9BY08 206 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 OR51E2Q9H255 320 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 GKN1Q9NS71 199 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 ZNF226Q9NYT6 803 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 ZNF221Q9UK13 617 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 DUSP12Q9UNI6 340 aa15.69■□□□□ 0.1
SHMT2-231ENST00000557433 CCRL2O00421 344 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 RNASET2O00584 256 aaKnown RBP15.68■□□□□ 0.1
SHMT2-231ENST00000557433 UGT2B17O75795 530 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 STSP08842 583 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 LAMP1P11279 417 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 CKBP12277 381 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 CSKP41240 450 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 SLC15A1P46059 708 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 CRYBA2P53672 197 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 IRF8Q02556 426 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 CDH18Q13634 790 aa15.68■□□□□ 0.1
SHMT2-231ENST00000557433 STARD3Q14849 445 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms