RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SLC36A3Q495N2 470 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 CATSPEREQ5SY80 951 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 MLIPQ5VWP3 458 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 LPCAT4Q643R3 524 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 AMIGO2Q86SJ2 522 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 HPS6Q86YV9 775 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 FATE1Q969F0 183 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 HMCESQ96FZ2 354 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 BMFQ96LC9 184 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF382Q96SR6 550 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 SLC35C2Q9NQQ7 365 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF639Q9UID6 485 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 HCN2Q9UL51 889 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 CHKBQ9Y259 395 aa7.59□□□□□ -1.19
VPS13D-211ENST00000543710 LOC100130705A0A1B0GUX0 176 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 DPPA5A6NC42 116 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 MANBAO00462 879 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ARF4P18085 180 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 MARCKSL1P49006 195 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ACY1Q03154 408 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ST3GAL3Q11203 375 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 MYBPHQ13203 477 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 PON2Q15165 354 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 MANEALQ5VSG8 457 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 OR2T5Q6IEZ7 315 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 USP30Q70CQ3 517 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 VN1R5Q7Z5H4 357 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 CBR4Q8N4T8 237 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 CERS5Q8N5B7 392 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF781Q8N8C0 355 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 DTWD2Q8NBA8 298 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 OR2T29Q8NH02 315 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 RAB7BQ96AH8 199 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 TESCQ96BS2 214 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 RAB9BQ9NP90 201 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 SLC6A5Q9Y345 797 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 SPO11Q9Y5K1 396 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 E7ENX8 843 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 FAM227AF5H4B4 570 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 HAX1O00165 279 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 WNT9AO14904 365 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 LRRTM2O43300 516 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 UGDHO60701 494 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 IFNA21P01568 189 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 RHOP08100 348 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ETFAP13804 333 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF823P16415 610 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 SRP54P61011 504 aaKnown RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ABATP80404 500 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 PLIN5Q00G26 463 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 RHAGQ02094 409 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 DGCR6Q14129 220 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF169Q14929 603 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ARL13AQ5H913 290 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 KIAA1614Q5VZ46 1190 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ENPP7Q6UWV6 458 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 Q8N9G6 341 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 C7orf43Q8WVR3 580 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 KIAA1191Q96A73 305 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 POLR3BQ9NW08 1133 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ASF1AQ9Y294 204 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 INSL5Q9Y5Q6 135 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 SNED1Q8TER0 1413 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 PLCH1Q4KWH8 1693 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 PRAMEF33A0A0G2JMD5 474 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 PRAMEF10O60809 474 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 SLC2A2P11168 524 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ANXA3P12429 323 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 GLULP15104 373 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF20P17024 532 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 CAMK1Q14012 370 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 FASTKD3Q14CZ7 662 aaKnown RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 TEAD2Q15562 447 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 FAM180AQ6UWF9 173 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 C6orf89Q6UWU4 347 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF550Q7Z398 422 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 GPAT4Q86UL3 456 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 PARGQ86W56 976 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 PLXDC1Q8IUK5 500 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 KIAA0319LQ8IZA0 1049 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF366Q8N895 744 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 INO80EQ8NBZ0 244 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 L3HYPDHQ96EM0 354 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 G6PC3Q9BUM1 346 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 COQ10BQ9H8M1 238 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 PELI2Q9HAT8 420 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 MEPEQ9NQ76 525 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 TRNAU1APQ9NX07 287 aaKnown RBP7.58□□□□□ -1.2
VPS13D-211ENST00000543710 MS4A12Q9NXJ0 267 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 GLS2Q9UI32 602 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 ARAP2Q8WZ64 1704 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 SSC5DA1L4H1 1573 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 A0A1W2PP18 115 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 NAP1L6A6NFF2 107 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 MMP2P08253 660 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 HNF1AP20823 631 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 RAB28P51157 221 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 AQP4P55087 323 aa7.58□□□□□ -1.2
VPS13D-211ENST00000543710 TPTEP56180 551 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms