RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 KRT6BP04259 564 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 NEFHP12036 1026 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 ARL1P40616 181 aaPredicted RBP11.63□□□□□ -0.55
DDX55-210ENST00000543016 ETV5P41161 510 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 BCL6P41182 706 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 KRT6CP48668 564 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 ARFIP1P53367 373 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 STXBP1P61764 594 aaKnown RBP11.63□□□□□ -0.55
DDX55-210ENST00000543016 PPP2R2AP63151 447 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 CYP4F3Q08477 520 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 FAM53BQ14153 422 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 MUM1Q2TAK8 710 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 PRAMEF9Q5VWM5 478 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 PWWP2BQ6NUJ5 590 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 FOXR1Q6PIV2 292 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 VN1R4Q7Z5H5 301 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 TMEM126BQ8IUX1 230 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 ANKRD42Q8N9B4 389 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 SRFBP1Q8NEF9 429 aaKnown RBP11.63□□□□□ -0.55
DDX55-210ENST00000543016 OR52B6Q8NGF0 335 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 OR6Y1Q8NGX8 325 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 NT5CQ8TCD5 201 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 PROKR1Q8TCW9 393 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 NSUN5Q96P11 429 aaKnown RBP11.63□□□□□ -0.55
DDX55-210ENST00000543016 C17orf62Q9BQA9 187 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 SLC7A5P2Q9GIP4 190 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 ACTR5Q9H9F9 607 aaPredicted RBP11.63□□□□□ -0.55
DDX55-210ENST00000543016 CLK4Q9HAZ1 481 aaKnown RBP11.63□□□□□ -0.55
DDX55-210ENST00000543016 ASCL3Q9NQ33 180 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 ZNF490Q9ULM2 529 aaPredicted RBP11.63□□□□□ -0.55
DDX55-210ENST00000543016 CDC14AQ9UNH5 594 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 SNX6Q9UNH7 406 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 B3GALT1Q9Y5Z6 326 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 SLC22A7Q9Y694 548 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 KIF26BQ2KJY2 2108 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 LOC105369274A0A096LPK9 316 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 LOC102723532A0A0G2JNH3 316 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 FEZF1A0PJY2 475 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 HYKKA2RU49 373 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 C9orf172C9J069 976 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 FOXE1O00358 373 aaPredicted RBP11.62□□□□□ -0.55
DDX55-210ENST00000543016 LCMT2O60294 686 aaKnown RBP11.62□□□□□ -0.55
DDX55-210ENST00000543016 EIF2S1P05198 315 aaKnown RBP11.62□□□□□ -0.55
DDX55-210ENST00000543016 KLK3P07288 261 aaPredicted RBP11.62□□□□□ -0.55
DDX55-210ENST00000543016 FGF4P08620 206 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 CD63P08962 238 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 PIM1P11309 404 aaPredicted RBP11.62□□□□□ -0.55
DDX55-210ENST00000543016 CD22P20273 847 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 SLC5A2P31639 672 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 GCGRP47871 477 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 WDR4P57081 412 aaKnown RBP11.62□□□□□ -0.55
DDX55-210ENST00000543016 TGM3Q08188 693 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 IFT88Q13099 833 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 RCN2Q14257 317 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 CPSF6Q16630 551 aaKnown RBP eCLIP11.62□□□□□ -0.55
DDX55-210ENST00000543016 DEFB110Q30KQ9 67 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 TBC1D25Q3MII6 688 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 TMEM35AQ53FP2 167 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 FRG2Q64ET8 278 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 ATG16L1Q676U5 607 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 FRMPD2BQ6IN97 320 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 RHBDD2Q6NTF9 364 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 PRMT9Q6P2P2 845 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 MARCH9Q86YJ5 346 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 MYLK4Q86YV6 388 aaPredicted RBP11.62□□□□□ -0.55
DDX55-210ENST00000543016 PLD3Q8IV08 490 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 OR4N4Q8N0Y3 316 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 ZNF740Q8NDX6 193 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 OR7G3Q8NG95 312 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 OR4F6Q8NGB9 312 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 CREB3L4Q8TEY5 395 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 AGAP11Q8TF27 550 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 ZBTB9Q96C00 473 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 FRG2BQ96QU4 278 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 PAIP2Q9BPZ3 127 aaKnown RBP11.62□□□□□ -0.55
DDX55-210ENST00000543016 CENPKQ9BS16 269 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 ULBP3Q9BZM4 244 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 SPRY4Q9C004 299 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 SPRTNQ9H040 489 aaPredicted RBP11.62□□□□□ -0.55
DDX55-210ENST00000543016 ELOVL6Q9H5J4 265 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 APMAPQ9HDC9 416 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 MID1IP1Q9NPA3 183 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 TXLNGQ9NUQ3 528 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 NMRK1Q9NWW6 199 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.62□□□□□ -0.55
DDX55-210ENST00000543016 RNF11Q9Y3C5 154 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 SEC16AO15027 2179 aa11.62□□□□□ -0.55
DDX55-210ENST00000543016 AHCTF1Q8WYP5 2266 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 A0A088AWK7 358 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 STMND1H3BQB6 276 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 KLF11O14901 512 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 NDUFS4O43181 175 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 ZNF749O43361 778 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 HCRTR1O43613 425 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 NRP2O60462 931 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 BRINP1O60477 761 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 CRCPO75575 148 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 STK17BO94768 372 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 ONECUT2O95948 504 aa11.61□□□□□ -0.55
DDX55-210ENST00000543016 CCNYL3P0C7X3 344 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms