RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 GZMKP49863 264 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 UFM1P61960 85 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 BAK1Q16611 211 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 TMEM65Q6PI78 240 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 PLCZ1Q86YW0 608 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 BBS7Q8IWZ6 715 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 PJA1Q8NG27 643 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 GIMAP1Q8WWP7 306 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 NCLNQ969V3 563 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 ZNF689Q96CS4 500 aaPredicted RBP13.52□□□□□ -0.24
LIG1-203ENST00000536218 CCDC126Q96EE4 140 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 SLC47A1Q96FL8 570 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 TRMT2BQ96GJ1 504 aaKnown RBP13.52□□□□□ -0.24
LIG1-203ENST00000536218 TBCDQ9BTW9 1192 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 LRRC3Q9BY71 257 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 GSTO2Q9H4Y5 243 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 SCPEP1Q9HB40 452 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 IL21Q9HBE4 155 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 TAS2R13Q9NYV9 303 aa13.52□□□□□ -0.24
LIG1-203ENST00000536218 EIF3KQ9UBQ5 218 aaKnown RBP13.52□□□□□ -0.24
LIG1-203ENST00000536218 DNMT3AQ9Y6K1 912 aaPredicted RBP13.52□□□□□ -0.24
LIG1-203ENST00000536218 A0A1W2PQ09 198 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 ASPDHA6ND91 283 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 CDC7O00311 574 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 SNX4O95219 450 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 LAG3P18627 525 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 UGT2B10P36537 528 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 FOXM1Q08050 763 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 TSNQ15631 228 aaKnown RBP13.52□□□□□ -0.25
LIG1-203ENST00000536218 PLA2G4EQ3MJ16 856 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 CPA6Q8N4T0 437 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 LINC00469Q8N7U9 141 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 SIDT2Q8NBJ9 832 aaKnown RBP13.52□□□□□ -0.25
LIG1-203ENST00000536218 HERVK_113Q902F9 699 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 ST8SIA2Q92186 375 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 MRPS31Q92665 395 aaKnown RBP13.52□□□□□ -0.25
LIG1-203ENST00000536218 MARC2Q969Z3 335 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 UGT2B28Q9BY64 529 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 CCDC59Q9P031 241 aaKnown RBP13.52□□□□□ -0.25
LIG1-203ENST00000536218 IKZF3Q9UKT9 509 aa13.52□□□□□ -0.25
LIG1-203ENST00000536218 ABHD14A-ACY1A0A1B0GW23 586 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 KATNA1O75449 491 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 WDR47O94967 919 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 RPLP0P05388 317 aaKnown RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 TNFSF8P32971 234 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 DCTP40126 519 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 SH3BP2P78314 561 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 GNA13Q14344 377 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 SLC14A2Q15849 920 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 UNC50Q53HI1 259 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 ZNF678Q5SXM1 525 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 AFTPHQ6ULP2 937 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 DET1Q7L5Y6 550 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 DDX53Q86TM3 631 aaKnown RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 SYVN1Q86TM6 617 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 SLC22A9Q8IVM8 553 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 TCEAL8Q8IYN2 117 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 CAMKK1Q8N5S9 505 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 HJURPQ8NCD3 748 aaPredicted RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 ZBTB44Q8NCP5 570 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 AKAP1Q92667 903 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIG1-203ENST00000536218 RIT1Q92963 219 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 TRIM43Q96BQ3 446 aaPredicted RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 TESCQ96BS2 214 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 TRMT61AQ96FX7 289 aaKnown RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 FRMD6Q96NE9 622 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 LIN7BQ9HAP6 207 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 ADGRE2Q9UHX3 823 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 RNF112Q9ULX5 631 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 NUPL2O15504 423 aaKnown RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 FGF18O76093 207 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 LRG1P02750 347 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 FHP07954 510 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 TALDO1P37837 337 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 BTN1A1Q13410 526 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 POU4F3Q15319 338 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 METTL2BQ6P1Q9 378 aaKnown RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 TTLQ8NG68 377 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 GPR150Q8NGU9 434 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 FAM162AQ96A26 154 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 CCDC32Q9BV29 185 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 FAM83DQ9H4H8 585 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 SEMA4BQ9NPR2 832 aaPredicted RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 SDR39U1Q9NRG7 319 aaPredicted RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 B3GNT2Q9NY97 397 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 LHX3Q9UBR4 397 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 BTN3A1O00481 513 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 ERN1O75460 977 aaKnown RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 CXCL14O95715 111 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 OGNP20774 298 aaKnown RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 KRT20P35900 424 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 PPP3CCP48454 512 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 CCT3P49368 545 aaKnown RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 MVKQ03426 396 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 GTF2H3Q13889 308 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 SETMARQ53H47 684 aaPredicted RBP13.51□□□□□ -0.25
LIG1-203ENST00000536218 SHEQ5VZ18 495 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 NCEH1Q6PIU2 408 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 CREB3L2Q70SY1 520 aa13.51□□□□□ -0.25
LIG1-203ENST00000536218 DCBLD1Q8N8Z6 715 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms