RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 NT5CQ8TCD5 201 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 CREB3L4Q8TEY5 395 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 MZB1Q8WU39 189 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 CAPS2Q9BXY5 557 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 TGIF2Q9GZN2 237 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 DRC3Q9H069 523 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 ADNPQ9H2P0 1102 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 GPN3Q9UHW5 284 aaPredicted RBP12.33□□□□□ -0.44
VPS28-216ENST00000533806 CDC14AQ9UNH5 594 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 PTRH2Q9Y3E5 179 aaKnown RBP12.33□□□□□ -0.44
VPS28-216ENST00000533806 DYRK1BQ9Y463 629 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 SLC22A7Q9Y694 548 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 IKBKGQ9Y6K9 419 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 MAU2Q9Y6X3 613 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 PCSK5Q92824 1860 aa12.33□□□□□ -0.44
VPS28-216ENST00000533806 A0A0A6YYC8 382 aaPredicted RBP12.32□□□□□ -0.44
VPS28-216ENST00000533806 SYCE1LA8MT33 242 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 H0YIG0 161 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 I3L1I5 382 aaPredicted RBP12.32□□□□□ -0.44
VPS28-216ENST00000533806 WFS1O76024 890 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 SLU7O95391 586 aaKnown RBP12.32□□□□□ -0.44
VPS28-216ENST00000533806 NSA2O95478 260 aaKnown RBP12.32□□□□□ -0.44
VPS28-216ENST00000533806 TBX6O95947 436 aaPredicted RBP12.32□□□□□ -0.44
VPS28-216ENST00000533806 SBK3P0C264 359 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 ZGLP1P0C6A0 271 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 SMIM10L1P0DMW3 83 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 CD22P20273 847 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 VARSP26640 1264 aaKnown RBP12.32□□□□□ -0.44
VPS28-216ENST00000533806 FOLR3P41439 243 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 GLRBP48167 497 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 AGTR2P50052 363 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 VSNL1P62760 191 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 SETDB1Q15047 1291 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 TECRLQ5HYJ1 363 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 TAOK1Q7L7X3 1001 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 LRRC70Q7Z2Q7 622 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 PPP1R32Q7Z5V6 425 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 TMPRSS11BQ86T26 416 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 PDSS2Q86YH6 399 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 SHISA5Q8N114 240 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 STT3BQ8TCJ2 826 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 MTBPQ96DY7 904 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 SMIM10Q96HG1 83 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 AIF1LQ9BQI0 150 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 TRIM55Q9BYV6 548 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 SLC6A16Q9GZN6 736 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 PITHD1Q9GZP4 211 aaPredicted RBP12.32□□□□□ -0.44
VPS28-216ENST00000533806 AICDAQ9GZX7 198 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 VPS11Q9H270 941 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 NT5DC2Q9H857 520 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 WWOXQ9NZC7 414 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 ZNF282Q9UDV7 671 aaPredicted RBP12.32□□□□□ -0.44
VPS28-216ENST00000533806 NXT1Q9UKK6 140 aaKnown RBP12.32□□□□□ -0.44
VPS28-216ENST00000533806 ZNF490Q9ULM2 529 aaPredicted RBP12.32□□□□□ -0.44
VPS28-216ENST00000533806 MAN2B2Q9Y2E5 1009 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 MAP4K5Q9Y4K4 846 aa12.32□□□□□ -0.44
VPS28-216ENST00000533806 CEACAM4O75871 244 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 SHBGP04278 402 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 PRB1P04280 392 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 SLC35G6P0C7Q6 338 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 FBLP22087 321 aaKnown RBP12.31□□□□□ -0.44
VPS28-216ENST00000533806 MMP11P24347 488 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 EFNA3P52797 238 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 KLC1Q07866 573 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 KCNAB2Q13303 367 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 DOC2AQ14183 400 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 NAA30Q147X3 362 aaPredicted RBP12.31□□□□□ -0.44
VPS28-216ENST00000533806 RASA2Q15283 850 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 PCBP2Q15366 365 aaKnown RBP eCLIP12.31□□□□□ -0.44
VPS28-216ENST00000533806 TBCCQ15814 346 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 PDK4Q16654 411 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 NDUFA9Q16795 377 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 VWA2Q5GFL6 755 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 LGSNQ5TDP6 509 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 METTL2BQ6P1Q9 378 aaKnown RBP12.31□□□□□ -0.44
VPS28-216ENST00000533806 WDR93Q6P2C0 686 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 SH2D5Q6ZV89 423 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 VN1R5Q7Z5H4 357 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 MRGPREQ86SM8 312 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 LAPTM4BQ86VI4 370 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 TRPV3Q8NET8 790 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 OR9A4Q8NGU2 314 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 COL26A1Q96A83 441 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 MMABQ96EY8 250 aaPredicted RBP12.31□□□□□ -0.44
VPS28-216ENST00000533806 IP6K3Q96PC2 410 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 MLXIPLQ9NP71 852 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 ANKRD12Q6UB98 2062 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 ZNF462Q96JM2 2506 aa12.31□□□□□ -0.44
VPS28-216ENST00000533806 SPTA1P02549 2419 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 MDC1Q14676 2089 aaKnown RBP12.3□□□□□ -0.44
VPS28-216ENST00000533806 LRRC14BA6NHZ5 514 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 SUPT3HB4E1H0 165 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 K7EPI3 171 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 SOCS6O14544 535 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 PRPF4O43172 522 aaKnown RBP eCLIP12.3□□□□□ -0.44
VPS28-216ENST00000533806 NDUFS4O43181 175 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 CCNT2O60583 730 aaKnown RBP12.3□□□□□ -0.44
VPS28-216ENST00000533806 SUPT3HO75486 399 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 S100BP04271 92 aaPredicted RBP12.3□□□□□ -0.44
VPS28-216ENST00000533806 SERPINA6P08185 405 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms