RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ATXN7O15265 892 aaPredicted RBP18.88■□□□□ 0.61
CPSF1-209ENST00000532725 CCNT2O60583 730 aaKnown RBP18.88■□□□□ 0.61
CPSF1-209ENST00000532725 HSD17B3P37058 310 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 ALDH18A1P54886 795 aaKnown RBP18.88■□□□□ 0.61
CPSF1-209ENST00000532725 PCDH1Q08174 1060 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 PWP1Q13610 501 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 SSPNQ14714 243 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 NKG7Q16617 165 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 PDK4Q16654 411 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 NDUFA9Q16795 377 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 PFKFB4Q16877 469 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 TSNAXIP1Q2TAA8 658 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 BORAQ6PGQ7 559 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 LRRC70Q7Z2Q7 622 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 CNPY4Q8N129 248 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 OR2Y1Q8NGV0 311 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 WDR34Q96EX3 536 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 PARD6BQ9BYG5 372 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 DRC3Q9H069 523 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 EHD1Q9H4M9 534 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 WDR54Q9H977 334 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 COPG2Q9UBF2 871 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 POLHQ9Y253 713 aa18.88■□□□□ 0.61
CPSF1-209ENST00000532725 PTRH2Q9Y3E5 179 aaKnown RBP18.88■□□□□ 0.61
CPSF1-209ENST00000532725 A0A0A6YYC8 382 aaPredicted RBP18.87■□□□□ 0.61
CPSF1-209ENST00000532725 I3L1I5 382 aaPredicted RBP18.87■□□□□ 0.61
CPSF1-209ENST00000532725 CLGNO14967 610 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 CXCR2P25025 360 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 CASP2P42575 452 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 ATRXP46100 2492 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 E2F2Q14209 437 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 SETDB1Q15047 1291 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 RBBP5Q15291 538 aaKnown RBP18.87■□□□□ 0.61
CPSF1-209ENST00000532725 TDRPQ86YL5 185 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 AMER3Q8N944 861 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 EXD3Q8N9H8 876 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 SNX31Q8N9S9 440 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 THAP4Q8WY91 577 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 MRPL57Q9BQC6 102 aaKnown RBP18.87■□□□□ 0.61
CPSF1-209ENST00000532725 PITHD1Q9GZP4 211 aaPredicted RBP18.87■□□□□ 0.61
CPSF1-209ENST00000532725 NT5DC2Q9H857 520 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 PPCSQ9HAB8 311 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 CTSFQ9UBX1 484 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 TBK1Q9UHD2 729 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 ZNF490Q9ULM2 529 aaPredicted RBP18.87■□□□□ 0.61
CPSF1-209ENST00000532725 KCNMB2Q9Y691 235 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 SLC22A7Q9Y694 548 aa18.87■□□□□ 0.61
CPSF1-209ENST00000532725 IGLV3-12A0A075B6K2 115 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 K7EPI3 171 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 WFS1O76024 890 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 UMODP07911 640 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 SBK3P0C264 359 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 SLC35G6P0C7Q6 338 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 GFAPP14136 432 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 FOLR3P41439 243 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 CCR10P46092 362 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 DSG2Q14126 1118 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 DOC2AQ14183 400 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 SLBPQ14493 270 aaKnown RBP eCLIP18.86■□□□□ 0.61
CPSF1-209ENST00000532725 RASA2Q15283 850 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 PCBP2Q15366 365 aaKnown RBP eCLIP18.86■□□□□ 0.61
CPSF1-209ENST00000532725 TBCCQ15814 346 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 EMBQ6PCB8 327 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 TMIGD1Q6UXZ0 262 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 SH2D5Q6ZV89 423 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 CYP4X1Q8N118 509 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 TRPV3Q8NET8 790 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 NT5CQ8TCD5 201 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 ACMSDQ8TDX5 336 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 CREB3L4Q8TEY5 395 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 APOBEC4Q8WW27 367 aaKnown RBP18.86■□□□□ 0.61
CPSF1-209ENST00000532725 MMABQ96EY8 250 aaPredicted RBP18.86■□□□□ 0.61
CPSF1-209ENST00000532725 SCYL1Q96KG9 808 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 SPSB2Q99619 263 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 CPSF2Q9P2I0 782 aaKnown RBP18.86■□□□□ 0.61
CPSF1-209ENST00000532725 OPTCQ9UBM4 332 aa18.86■□□□□ 0.61
CPSF1-209ENST00000532725 ZNF282Q9UDV7 671 aaPredicted RBP18.86■□□□□ 0.61
CPSF1-209ENST00000532725 A0A1W2PPM1 405 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 LRRC14BA6NHZ5 514 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 NDUFS4O43181 175 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 NSA2O95478 260 aaKnown RBP18.85■□□□□ 0.61
CPSF1-209ENST00000532725 CD22P20273 847 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 FBLP22087 321 aaKnown RBP18.85■□□□□ 0.61
CPSF1-209ENST00000532725 SLCO1A2P46721 670 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 HYAL2Q12891 473 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 CHIT1Q13231 466 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 NAA30Q147X3 362 aaPredicted RBP18.85■□□□□ 0.61
CPSF1-209ENST00000532725 XKR6Q5GH73 641 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 PRSS41Q7RTY9 318 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 KRT78Q8N1N4 520 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 AFAP1L2Q8N4X5 818 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 OR9A4Q8NGU2 314 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 STT3BQ8TCJ2 826 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 CAVIN3Q969G5 261 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 PTCD3Q96EY7 689 aaKnown RBP18.85■□□□□ 0.61
CPSF1-209ENST00000532725 TMEM216Q9P0N5 145 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 XPR1Q9UBH6 696 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 RAB21Q9UL25 225 aa18.85■□□□□ 0.61
CPSF1-209ENST00000532725 TNPO3Q9Y5L0 923 aaKnown RBP18.85■□□□□ 0.61
CPSF1-209ENST00000532725 FOXO6A8MYZ6 492 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms