RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 PQLC2Q6ZP29 291 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 TIPARPQ7Z3E1 657 aaKnown RBP3.66□□□□□ -1.82
CD44-235ENST00000532339 GPR65Q8IYL9 337 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 AVL9Q8NBF6 648 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 OLIG1Q8TAK6 271 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 LRRC8CQ8TDW0 803 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 TRPC4APQ8TEL6 797 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 DUSP19Q8WTR2 217 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 SMARCD2Q92925 531 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 PGLYRP2Q96PD5 576 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 DUX3Q96PT4 197 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 MRPL1Q9BYD6 325 aaKnown RBP3.66□□□□□ -1.82
CD44-235ENST00000532339 PIH1D3Q9NQM4 214 aaKnown RBP3.66□□□□□ -1.82
CD44-235ENST00000532339 SLC35C2Q9NQQ7 365 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 PAG1Q9NWQ8 432 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 FBXW11Q9UKB1 542 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 ERVK-11Q9UQG0 969 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 CLIC4Q9Y696 253 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 RTTNQ86VV8 2226 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 LOC102723996A0A087X1L8 192 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 IGKV6D-41A0A0C4DH26 115 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 hCG_1809904A0A1W2PP81 198 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 A0A1W2PPE2 198 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 A0A1W2PR64 198 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 ZNF587BE7ETH6 402 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 C16orf97H3BN30 126 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 OGG1O15527 345 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 AP5Z1O43299 807 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 DAB1O75553 588 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 JRKO75564 520 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 IDH1O75874 414 aaKnown RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 NADKO95544 446 aaPredicted RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 CYC1P08574 325 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 MMP9P14780 707 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 CEBPBP17676 345 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 SUOXP51687 545 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 CRIP2P52943 208 aaPredicted RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 RAD23AP54725 363 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 BRWD1-AS2P59051 145 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 KRTAP10-5P60370 271 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 FCHO2Q0JRZ9 810 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 GRIK2Q13002 908 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 C15orf59Q2T9L4 293 aaPredicted RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 MMEL1Q495T6 779 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 HES3Q5TGS1 186 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 METTL7BQ6UX53 244 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 MARK2Q7KZI7 788 aaKnown RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 SYT2Q8N9I0 419 aaPredicted RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 POMGNT2Q8NAT1 580 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 POGLUT1Q8NBL1 392 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 SCCPDHQ8NBX0 429 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 SDR42E1Q8WUS8 393 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 TMCO6Q96DC7 493 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 PGAP3Q96FM1 320 aaPredicted RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 EGLN2Q96KS0 407 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 DGAT2Q96PD7 388 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 ACOX2Q99424 681 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 KIFC3Q9BVG8 833 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 KCNN2Q9H2S1 579 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 RABEP2Q9H5N1 569 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 FAM124BQ9H5Z6 455 aaPredicted RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 C17orf75Q9HAS0 396 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 TRPV4Q9HBA0 871 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 HINT3Q9NQE9 182 aaKnown RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 TBC1D13Q9NVG8 400 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 TAB2Q9NYJ8 693 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 DNAJB4Q9UDY4 337 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 PLAGL1Q9UM63 463 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 EXO1Q9UQ84 846 aaKnown RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 GINS2Q9Y248 185 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 R3HDM2Q9Y2K5 976 aaKnown RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 MYH8P13535 1937 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 RYR3Q15413 4870 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 TNRC6BQ9UPQ9 1833 aaKnown RBP3.65□□□□□ -1.83
CD44-235ENST00000532339 DOCK6Q96HP0 2047 aa3.65□□□□□ -1.83
CD44-235ENST00000532339 GREB1LQ9C091 1923 aaPredicted RBP3.64□□□□□ -1.83
CD44-235ENST00000532339 A0A1W2PS18 150 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 HEPACAM2A8MVW5 462 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 A8MXE2 369 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 FAM72CH0Y354 149 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 SOCS6O14544 535 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 PLRG1O43660 514 aaKnown RBP3.64□□□□□ -1.83
CD44-235ENST00000532339 HSPA4LO95757 839 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 PAK4O96013 591 aaPredicted RBP3.64□□□□□ -1.83
CD44-235ENST00000532339 RPN1P04843 607 aaKnown RBP3.64□□□□□ -1.83
CD44-235ENST00000532339 GNSP15586 552 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 GM2AP17900 193 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 MAOAP21397 527 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 MCCP23508 829 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 LMAN1P49257 510 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 GPR143P51810 404 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 FUT6P51993 359 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 CLDN6P56747 220 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 ZNF33AQ06730 810 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 SPOCK1Q08629 439 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 TFCP2Q12800 502 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 PRPF4BQ13523 1007 aaKnown RBP3.64□□□□□ -1.83
CD44-235ENST00000532339 C9orf152Q5JTZ5 239 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 PAPPA-AS1Q5QFB9 102 aa3.64□□□□□ -1.83
CD44-235ENST00000532339 FAM72AQ5TYM5 149 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms