RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 PCDH1Q08174 1060 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 E2F2Q14209 437 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 GGTA1PQ4G0N0 100 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 WASHC2DQ5SRD0 308 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 ASPGQ86U10 573 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 ZNF655Q8N720 491 aaPredicted RBP13.1□□□□□ -0.31
CD44-224ENST00000526669 CSNK1A1LQ8N752 337 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 ZNF781Q8N8C0 355 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 OR7G3Q8NG95 312 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 ZCCHC10Q8TBK6 192 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 MTERF1Q99551 399 aaKnown RBP13.1□□□□□ -0.31
CD44-224ENST00000526669 TRMOQ9BU70 441 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 CHRNA10Q9GZZ6 450 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 NT5DC2Q9H857 520 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 EML4Q9HC35 981 aaKnown RBP13.1□□□□□ -0.31
CD44-224ENST00000526669 RARRES3Q9UL19 164 aa13.1□□□□□ -0.31
CD44-224ENST00000526669 MANBAO00462 879 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 AZIN1O14977 448 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 POLR1CO15160 346 aaPredicted RBP13.09□□□□□ -0.31
CD44-224ENST00000526669 POLR3GO15318 223 aaPredicted RBP13.09□□□□□ -0.31
CD44-224ENST00000526669 SKAP2O75563 359 aaPredicted RBP13.09□□□□□ -0.31
CD44-224ENST00000526669 OR2B3O76000 313 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 TIAF1O95411 115 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 PDYNP01213 254 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 ENO1P06733 434 aaKnown RBP13.09□□□□□ -0.31
CD44-224ENST00000526669 KITP10721 976 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 AHRP35869 848 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 SERPINB5P36952 375 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 RPS13P62277 151 aaKnown RBP13.09□□□□□ -0.31
CD44-224ENST00000526669 SNRPNP63162 240 aaKnown RBP13.09□□□□□ -0.31
CD44-224ENST00000526669 GABREP78334 506 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 MC2RQ01718 297 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 IFT88Q13099 833 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 TOR1AIP1Q5JTV8 583 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 FAM47EQ6ZV65 393 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 LAS2Q8IYD9 372 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 DTWD1Q8N5C7 304 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 HUS1BQ8NHY5 278 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 RAB3IL1Q8TBN0 382 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 WDR20Q8TBZ3 569 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 SLC13A3Q8WWT9 602 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 SELENOMQ8WWX9 145 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 USP7Q93009 1102 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 UBE2E3Q969T4 207 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 MAGEB18Q96M61 343 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 SARGQ9BW04 601 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 SLC29A3Q9BZD2 475 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 AICDAQ9GZX7 198 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 ELOVL6Q9H5J4 265 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 SLCO1B3Q9NPD5 702 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 PNPOQ9NVS9 261 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 MARCOQ9UEW3 520 aaPredicted RBP13.09□□□□□ -0.31
CD44-224ENST00000526669 ZFP69BQ9UJL9 534 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 RUVBL1Q9Y265 456 aaKnown RBP13.09□□□□□ -0.31
CD44-224ENST00000526669 PCDHGA11Q9Y5H2 935 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 PTGDR2Q9Y5Y4 395 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 AP1M2Q9Y6Q5 423 aa13.09□□□□□ -0.31
CD44-224ENST00000526669 A0A0G2JN53 185 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 MAGEB17A8MXT2 336 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 B4E171 279 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 H0YIV9 168 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 SNNO75324 88 aaPredicted RBP13.08□□□□□ -0.32
CD44-224ENST00000526669 MED26O95402 600 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 B3GALT4O96024 378 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 TGFB1P01137 390 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 UROSP10746 265 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 TSPAN7P41732 249 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 FRG2Q64ET8 278 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 PWWP2BQ6NUJ5 590 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 PPP1R3BQ86XI6 285 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 TMEM126BQ8IUX1 230 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 GPR135Q8IZ08 494 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 CACTIN-AS1Q8N1I8 211 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 METTL27Q8N6F8 245 aaPredicted RBP13.08□□□□□ -0.32
CD44-224ENST00000526669 TTC29Q8NA56 475 aaPredicted RBP13.08□□□□□ -0.32
CD44-224ENST00000526669 KCT2Q8NC54 265 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 CAMKVQ8NCB2 501 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 CREB3L4Q8TEY5 395 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 ZNF473Q8WTR7 871 aaKnown RBP13.08□□□□□ -0.32
CD44-224ENST00000526669 REPS1Q96D71 796 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 TM4SF19Q96DZ7 209 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 THAP11Q96EK4 314 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 PPP1R36Q96LQ0 422 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 MAGEB10Q96LZ2 347 aaPredicted RBP13.08□□□□□ -0.32
CD44-224ENST00000526669 FRG2BQ96QU4 278 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 SCNM1Q9BWG6 230 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 PITHD1Q9GZP4 211 aaPredicted RBP13.08□□□□□ -0.32
CD44-224ENST00000526669 RHBGQ9H310 441 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 OR51B5Q9H339 312 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 KLHL31Q9H511 634 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 DMRT3Q9NQL9 472 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 THAP1Q9NVV9 213 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 SERTAD3Q9UJW9 196 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 SNX6Q9UNH7 406 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 MRPS2Q9Y399 296 aaKnown RBP13.08□□□□□ -0.32
CD44-224ENST00000526669 RAP2CQ9Y3L5 183 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 TRAF6Q9Y4K3 522 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 B3GALT1Q9Y5Z6 326 aa13.08□□□□□ -0.32
CD44-224ENST00000526669 NUP214P35658 2090 aaPredicted RBP13.08□□□□□ -0.32
CD44-224ENST00000526669 TCP11X1B4DZS4 312 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms