RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 DNA2P51530 1060 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 LBX1P52954 281 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 LMO4P61968 165 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 FASTKD3Q14CZ7 662 aaKnown RBP3.94□□□□□ -1.78
CD44-223ENST00000526553 FAM174BQ3ZCQ3 159 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 CCDC92Q53HC0 331 aaPredicted RBP3.94□□□□□ -1.78
CD44-223ENST00000526553 PHLDB2Q86SQ0 1253 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 HOOK3Q86VS8 718 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 TUSC5Q8IXB3 177 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 KLHL7Q8IXQ5 586 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 KLHDC1Q8N7A1 406 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 SPC24Q8NBT2 197 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 OR7A2PQ8NGA2 310 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 FAM222BQ8WU58 562 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 GTF3AQ92664 365 aaKnown RBP3.94□□□□□ -1.78
CD44-223ENST00000526553 DNASE1L2Q92874 299 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 CCDC47Q96A33 483 aaKnown RBP3.94□□□□□ -1.78
CD44-223ENST00000526553 CENPTQ96BT3 561 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 INTS14Q96SY0 518 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 CCDC3Q9BQI4 270 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 MMADHCQ9H3L0 296 aaPredicted RBP3.94□□□□□ -1.78
CD44-223ENST00000526553 FZD8Q9H461 694 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 FN3KQ9H479 309 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 SPHK2Q9NRA0 654 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 PANK4Q9NVE7 773 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 TBC1D7Q9P0N9 293 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 POLLQ9UGP5 575 aa3.94□□□□□ -1.78
CD44-223ENST00000526553 EIF4G1Q04637 1599 aaKnown RBP3.93□□□□□ -1.78
CD44-223ENST00000526553 SCRIBQ14160 1630 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 A4D1N5 150 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 SLC33A1O00400 549 aaPredicted RBP3.93□□□□□ -1.78
CD44-223ENST00000526553 SOCS3O14543 225 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 AP5Z1O43299 807 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 SNX3O60493 162 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 ATP6AP2O75787 350 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 ATP1B1P05026 303 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 PRKAR1AP10644 381 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 STMN1P16949 149 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 RPL35AP18077 110 aaKnown RBP3.93□□□□□ -1.78
CD44-223ENST00000526553 HLA-DPA1P20036 260 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 PRKACGP22612 351 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 ACAT1P24752 427 aaKnown RBP3.93□□□□□ -1.78
CD44-223ENST00000526553 PRKCIP41743 596 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 TSFMP43897 325 aaKnown RBP3.93□□□□□ -1.78
CD44-223ENST00000526553 STX1BP61266 288 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 CALCOCO2Q13137 446 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 PPP2R5CQ13362 524 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 NFATC2Q13469 925 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 TRIM29Q14134 588 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 SNAI3Q3KNW1 292 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 FUT11Q495W5 492 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 GPR33Q49SQ1 333 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 GLIPR1L2Q4G1C9 344 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 TAF1BQ53T94 588 aaPredicted RBP3.93□□□□□ -1.78
CD44-223ENST00000526553 NOTUMQ6P988 496 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 ENPP7Q6UWV6 458 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 ZSCAN30Q86W11 494 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 CATSPERDQ86XM0 798 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 NHLRC2Q8NBF2 726 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 OCC1Q8TAD7 63 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 PROX1Q92786 737 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 PARK7Q99497 189 aaKnown RBP3.93□□□□□ -1.78
CD44-223ENST00000526553 SLC2A11Q9BYW1 496 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 NYXQ9GZU5 481 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 DNAJC4Q9NNZ3 241 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 TEX10Q9NXF1 929 aaPredicted RBP3.93□□□□□ -1.78
CD44-223ENST00000526553 TXNDC16Q9P2K2 825 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 ITGA11Q9UKX5 1188 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 CSNK1G3Q9Y6M4 447 aa3.93□□□□□ -1.78
CD44-223ENST00000526553 TDRD15B5MCY1 1934 aaKnown RBP3.93□□□□□ -1.78
CD44-223ENST00000526553 COL5A2P05997 1499 aaPredicted RBP3.92□□□□□ -1.78
CD44-223ENST00000526553 C5orf52A6NGY3 159 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 SNURFLB1AK76 121 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 HTATSF1O43719 755 aaKnown RBP3.92□□□□□ -1.78
CD44-223ENST00000526553 RPS6KA5O75582 802 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 LUC7L3O95232 432 aaKnown RBP3.92□□□□□ -1.78
CD44-223ENST00000526553 IGHEP01854 428 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 ATP6V1E1P36543 226 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 SNU13P55769 128 aaKnown RBP3.92□□□□□ -1.78
CD44-223ENST00000526553 TMEM50BP56557 158 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 ASIC1P78348 528 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 TAB1Q15750 504 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 MTHFSDQ2M296 383 aaKnown RBP3.92□□□□□ -1.78
CD44-223ENST00000526553 ZNF789Q5FWF6 425 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 KIF6Q6ZMV9 814 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 GBP6Q6ZN66 633 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 FAM89BQ8N5H3 189 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 ARL10Q8N8L6 244 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 NUP37Q8NFH4 326 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 PIK3R3Q92569 461 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 EXOC4Q96A65 974 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 LRRC61Q9BV99 259 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 KATNB1Q9BVA0 655 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 UTP14AQ9BVJ6 771 aaKnown RBP3.92□□□□□ -1.78
CD44-223ENST00000526553 TDRD1Q9BXT4 1180 aaKnown RBP3.92□□□□□ -1.78
CD44-223ENST00000526553 TMEM206Q9H813 350 aa3.92□□□□□ -1.78
CD44-223ENST00000526553 ARID2Q68CP9 1835 aa3.91□□□□□ -1.78
CD44-223ENST00000526553 YDJCA8MPS7 323 aa3.91□□□□□ -1.78
CD44-223ENST00000526553 EPM2AB3EWF7 344 aa3.91□□□□□ -1.78
CD44-223ENST00000526553 DDX39AO00148 427 aaKnown RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms