RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 FAM60AQ9NP50 221 aa9.68□□□□□ -0.86
VPS28-204ENST00000526054 SLC6A20Q9NP91 592 aa9.68□□□□□ -0.86
VPS28-204ENST00000526054 PLEKHB1Q9UF11 243 aaPredicted RBP9.68□□□□□ -0.86
VPS28-204ENST00000526054 ESPL1Q14674 2120 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 TLDC2A0PJX2 215 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 OR2A25A4D2G3 310 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 UBXN8O00124 270 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 OR2B3O76000 313 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 WDR47O94967 919 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 ATXN8OSP0DMR3 200 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 GFAPP14136 432 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 EZRP15311 586 aaKnown RBP9.67□□□□□ -0.86
VPS28-204ENST00000526054 VARSP26640 1264 aaKnown RBP9.67□□□□□ -0.86
VPS28-204ENST00000526054 GRK3P35626 688 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 FOLR3P41439 243 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 SLC6A12P48065 614 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 TECRLQ5HYJ1 363 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 TCTE1Q5JU00 501 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 VWA5B1Q5TIE3 1220 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 ZNF385CQ66K41 422 aaPredicted RBP9.67□□□□□ -0.86
VPS28-204ENST00000526054 ZNF425Q6IV72 752 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 RNF44Q7L0R7 432 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 LRRC70Q7Z2Q7 622 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 THOC6Q86W42 341 aaKnown RBP9.67□□□□□ -0.86
VPS28-204ENST00000526054 PAQR7Q86WK9 346 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 MCATQ8IVS2 390 aaKnown RBP9.67□□□□□ -0.86
VPS28-204ENST00000526054 KLHDC8AQ8IYD2 350 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 PLD6Q8N2A8 252 aaKnown RBP9.67□□□□□ -0.86
VPS28-204ENST00000526054 OR2W6PQ8NHA6 318 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 MZB1Q8WU39 189 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 SLC5A11Q8WWX8 675 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 GPR78Q96P69 363 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 SMAD5Q99717 465 aaKnown RBP9.67□□□□□ -0.86
VPS28-204ENST00000526054 ZFYVE21Q9BQ24 234 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 SELENOSQ9BQE4 189 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 PLCD4Q9BRC7 762 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 TMEM79Q9BSE2 394 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 ROPN1BQ9BZX4 212 aaPredicted RBP9.67□□□□□ -0.86
VPS28-204ENST00000526054 ROPN1Q9HAT0 212 aaPredicted RBP9.67□□□□□ -0.86
VPS28-204ENST00000526054 TMEM184CQ9NVA4 438 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 CUEDC1Q9NWM3 386 aaPredicted RBP9.67□□□□□ -0.86
VPS28-204ENST00000526054 EURLQ9NYK6 297 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 XPR1Q9UBH6 696 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 GPN3Q9UHW5 284 aaPredicted RBP9.67□□□□□ -0.86
VPS28-204ENST00000526054 TMCO1Q9UM00 188 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 KCNE2Q9Y6J6 123 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 AP1M2Q9Y6Q5 423 aa9.67□□□□□ -0.86
VPS28-204ENST00000526054 IGKV1-8A0A0C4DH67 115 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 A0A0J9YVX5 310 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 TCP11X1B4DZS4 312 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 H7BY64 318 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 GOLGA8RI6L899 631 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 ZSCAN9O15535 394 aaPredicted RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 SRPX2O60687 465 aaPredicted RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 CTSVO60911 334 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 SMIM24O75264 130 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 SEMA7AO75326 666 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 STK16O75716 305 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 ALPPP05187 535 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 GSTA1P08263 222 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 PYGBP11216 843 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 CDH1P12830 882 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 NPPBP16860 134 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 GGT5P36269 586 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 GABRA4P48169 554 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 HSPA7P48741 367 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 CCR8P51685 355 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 YBX1P67809 324 aaKnown RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 RELAQ04206 551 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 CDC16Q13042 620 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 MRPL49Q13405 166 aaKnown RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 SLC9A5Q14940 896 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 ZXDCQ2QGD7 858 aaPredicted RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 BEND6Q5SZJ8 279 aaPredicted RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 C1orf189Q5VU69 101 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 MLIPQ5VWP3 458 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 HIST2H2BCQ6DN03 193 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 RHBDD2Q6NTF9 364 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 TLDC1Q6P9B6 456 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 CROCCP2Q86T23 111 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 IQCKQ8N0W5 287 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 TBC1D19Q8N5T2 526 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 RBMXL3Q8N7X1 1067 aaKnown RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 SNX31Q8N9S9 440 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 TTC29Q8NA56 475 aaPredicted RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 CLEC1AQ8NC01 280 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 PROKR1Q8TCW9 393 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 UBTD2Q8WUN7 234 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 RERGQ96A58 199 aaPredicted RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 FER1L6-AS2Q96M78 137 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 PRAP1Q96NZ9 151 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 IP6K3Q96PC2 410 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 OR4K3Q96R72 315 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 MRPL57Q9BQC6 102 aaKnown RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 CAPS2Q9BXY5 557 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 MRPL46Q9H2W6 279 aaKnown RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 PELI2Q9HAT8 420 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 TXLNGQ9NUQ3 528 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 DNAJC11Q9NVH1 559 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 ZNF358Q9NW07 568 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms