RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 CSNK2BP67870 215 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 GBE1Q04446 702 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 LRRC74AQ0VAA2 488 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 BNIP1Q12981 228 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 SNAPC1Q16533 368 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 WSCD2Q2TBF2 565 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 HLA-BQ31612 363 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 TCTEX1D4Q5JR98 221 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 NUP54Q7Z3B4 507 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 TMCO5AQ8N6Q1 288 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 TRIML2Q8N7C3 387 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 NIPA2Q8N8Q9 360 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 GBP7Q8N8V2 638 aaPredicted RBP3.37□□□□□ -1.87
CD44-217ENST00000525348 THAP8Q8NA92 274 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 PRSS33Q8NF86 280 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 SLAMF9Q96A28 289 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 PTERQ96BW5 349 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 NECTIN4Q96NY8 510 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 GCNAQ96QF7 691 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 CCDC3Q9BQI4 270 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 MRPL1Q9BYD6 325 aaKnown RBP3.37□□□□□ -1.87
CD44-217ENST00000525348 UPF3BQ9BZI7 483 aaKnown RBP3.37□□□□□ -1.87
CD44-217ENST00000525348 DNAI2Q9GZS0 605 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 ZCCHC17Q9NP64 241 aaKnown RBP3.37□□□□□ -1.87
CD44-217ENST00000525348 HOMER3Q9NSC5 361 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 DPP3Q9NY33 737 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 KIAA1257Q9ULG3 409 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 TRAF3IP3Q9Y228 551 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 TMED5Q9Y3A6 229 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 GAKO14976 1311 aa3.37□□□□□ -1.87
CD44-217ENST00000525348 COL5A2P05997 1499 aaPredicted RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 A0A1W2PPQ1 181 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 FAM170AA1A519 330 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 NEMP2A6NFY4 417 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 EPM2AB3EWF7 344 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 CASQ2O14958 399 aaPredicted RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 RNF113AO15541 343 aaKnown RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 MAGEC1O60732 1142 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 GLRA3O75311 464 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 UGT1A4P22310 534 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 TMOD1P28289 359 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 RGS19P49795 217 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 MAPK12P53778 367 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 CLNS1AP54105 237 aaKnown RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 CCDC14Q49A88 953 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 PDLIM3Q53GG5 364 aaPredicted RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 C2CD6Q53TS8 623 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 TCTE1Q5JU00 501 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 BEND6Q5SZJ8 279 aaPredicted RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 SPATA1Q5VX52 437 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 SPINK14Q6IE38 97 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 C11orf63Q6NUN7 778 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 UGT3A1Q6NUS8 523 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 TATDN1Q6P1N9 297 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 FAM173BQ6P4H8 233 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 TRIM65Q6PJ69 517 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 ZNF600Q6ZNG1 722 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 NCCRP1Q6ZVX7 275 aaPredicted RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 NANOGNBQ7Z5D8 188 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 ZER1Q7Z7L7 766 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 LRRTM1Q86UE6 522 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 IQCA1Q86XH1 822 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 DNAAF5Q86Y56 855 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 MFN1Q8IWA4 741 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 MSANTD4Q8NCY6 345 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 IPMKQ8NFU5 416 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 OR13C3Q8NGS6 347 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 ZNF519Q8TB69 540 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 GATAD1Q8WUU5 269 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 SLCO2A1Q92959 643 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 CNDP1Q96KN2 507 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 SFXN2Q96NB2 322 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 ZMAT2Q96NC0 199 aaKnown RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 PSKH2Q96QS6 385 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 ZNF300Q96RE9 604 aaPredicted RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 USP28Q96RU2 1077 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 KRT12Q99456 494 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 UQCC2Q9BRT2 126 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 THUMPD2Q9BTF0 503 aaKnown RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 DGCR6LQ9BY27 220 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 MRPL9Q9BYD2 267 aaKnown RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 PITPNM3Q9BZ71 974 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 KLHL4Q9C0H6 718 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 MIS12Q9H081 205 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 GLT8D2Q9H1C3 349 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 ZSCAN16Q9H4T2 348 aaPredicted RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 OLAHQ9NV23 265 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 OR6C2Q9NZP2 312 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 CFDP1Q9UEE9 299 aaPredicted RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 GIMAP2Q9UG22 337 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 KLK13Q9UKR3 277 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 TMEM5Q9Y2B1 443 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 GLI2P10070 1586 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 SETD1AO15047 1707 aaKnown RBP3.36□□□□□ -1.87
CD44-217ENST00000525348 NCOA3Q9Y6Q9 1424 aa3.36□□□□□ -1.87
CD44-217ENST00000525348 ZCCHC11Q5TAX3 1644 aaKnown RBP3.35□□□□□ -1.87
CD44-217ENST00000525348 SOCS3O14543 225 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 FPGTO14772 594 aa3.35□□□□□ -1.87
CD44-217ENST00000525348 LSM1O15116 133 aaKnown RBP3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms