RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 NIPAL1Q6NVV3 410 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 FAM180AQ6UWF9 173 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 FRA10AC1Q70Z53 315 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 MAATS1Q7Z4T9 603 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 ZBED8Q8IZ13 594 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 SIRT6Q8N6T7 355 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 KCT2Q8NC54 265 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 CATSPER1Q8NEC5 780 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 SUN3Q8TAQ9 357 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 PYROXD1Q8WU10 500 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 SLC5A11Q8WWX8 675 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 ANKRD7Q92527 254 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 MAGEB10Q96LZ2 347 aaPredicted RBP12.93□□□□□ -0.34
TCOF1-215ENST00000515516 CYTH2Q99418 400 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 EGFL8Q99944 293 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 VN1R1Q9GZP7 353 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.93□□□□□ -0.34
TCOF1-215ENST00000515516 TXNDC16Q9P2K2 825 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 PYCARDQ9ULZ3 195 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 NAALAD2Q9Y3Q0 740 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 SLC22A7Q9Y694 548 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 NBASA2RRP1 2371 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 TRAV17A0A0B4J275 112 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 TRBC2A0A5B9 178 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 FAM187AA6NFU0 413 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 JRKO75564 520 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 RPL21P46778 160 aaKnown RBP12.92□□□□□ -0.34
TCOF1-215ENST00000515516 AGTR2P50052 363 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 PGGT1BP53609 377 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 MEF2AQ02078 507 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-215ENST00000515516 ACTN3Q08043 901 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-215ENST00000515516 PCOLCEQ15113 449 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 ABHD17BQ5VST6 288 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 PRSS41Q7RTY9 318 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 CPEB2Q7Z5Q1 589 aaKnown RBP12.92□□□□□ -0.34
TCOF1-215ENST00000515516 ZC3HC1Q86WB0 502 aaKnown RBP12.92□□□□□ -0.34
TCOF1-215ENST00000515516 ST6GALNAC3Q8NDV1 305 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 OR4K1Q8NGD4 311 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 GRHL3Q8TE85 626 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 CDKL2Q92772 493 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 HAS2Q92819 552 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 PDLIM2Q96JY6 352 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 WDR83Q9BRX9 315 aaKnown RBP12.92□□□□□ -0.34
TCOF1-215ENST00000515516 PLA2G3Q9NZ20 509 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 MOCS1Q9NZB8 636 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 CTNNAL1Q9UBT7 734 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 SLC5A6Q9Y289 635 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 KCNE2Q9Y6J6 123 aa12.92□□□□□ -0.34
TCOF1-215ENST00000515516 NPEPPSL1A6NEC2 478 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 URADA6NGE7 173 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 CYSRT1A8MQ03 144 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 A8MUI8 341 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 CDC7O00311 574 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 H2AFYO75367 372 aaKnown RBP12.91□□□□□ -0.34
TCOF1-215ENST00000515516 RDH16O75452 317 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 SEC24DO94855 1032 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-215ENST00000515516 ZNF37AP17032 561 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-215ENST00000515516 CASQ1P31415 396 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 SOX11P35716 441 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 HNMTP50135 292 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 FASTKD3Q14CZ7 662 aaKnown RBP12.91□□□□□ -0.34
TCOF1-215ENST00000515516 RBBP5Q15291 538 aaKnown RBP12.91□□□□□ -0.34
TCOF1-215ENST00000515516 BTBD16Q32M84 506 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 C4orf17Q53FE4 359 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 CATSPEREQ5SY80 951 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 RPUSD3Q6P087 351 aaKnown RBP12.91□□□□□ -0.34
TCOF1-215ENST00000515516 SBSNQ6UWP8 590 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 CAPN12Q6ZSI9 719 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 ABHD13Q7L211 337 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 ADAMTSL2Q86TH1 951 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 THOC6Q86W42 341 aaKnown RBP12.91□□□□□ -0.34
TCOF1-215ENST00000515516 BCORP1Q8N888 145 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 FAR1Q8WVX9 515 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 PSMF1Q92530 271 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 NEIL2Q969S2 332 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 PEX11GQ96HA9 241 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 C5orf34Q96MH7 638 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 TSNARE1Q96NA8 513 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 OR4K3Q96R72 315 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 BARD1Q99728 777 aaKnown RBP12.91□□□□□ -0.34
TCOF1-215ENST00000515516 AIF1LQ9BQI0 150 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 ERP44Q9BS26 406 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 SARGQ9BW04 601 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 DPH5Q9H2P9 285 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 RHOJQ9H4E5 214 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 GPAMQ9HCL2 828 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 STMN3Q9NZ72 180 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 WHRNQ9P202 907 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 ABI3Q9P2A4 366 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 PLEKHB1Q9UF11 243 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-215ENST00000515516 NTNG1Q9Y2I2 539 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 PSAT1Q9Y617 370 aa12.91□□□□□ -0.34
TCOF1-215ENST00000515516 IGHV3-20A0A0C4DH32 117 aa12.9□□□□□ -0.34
TCOF1-215ENST00000515516 E7ESA3 106 aa12.9□□□□□ -0.34
TCOF1-215ENST00000515516 EIF3HO15372 352 aaKnown RBP eCLIP12.9□□□□□ -0.345e-6■■■□□ 14.9
TCOF1-215ENST00000515516 SNRNP200O75643 2136 aaKnown RBP12.9□□□□□ -0.34
TCOF1-215ENST00000515516 CELA2AP08217 269 aa12.9□□□□□ -0.34
TCOF1-215ENST00000515516 ITGAMP11215 1152 aa12.9□□□□□ -0.34
TCOF1-215ENST00000515516 EDN3P14138 238 aa12.9□□□□□ -0.34
TCOF1-215ENST00000515516 ALOX12P18054 663 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms