RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DCBLD1Q8N8Z6 715 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 SPATA4Q8NEY3 305 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 FANK1Q8TC84 345 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 PYROXD1Q8WU10 500 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 USP7Q93009 1102 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 CCDC74BQ96LY2 380 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 COG8Q96MW5 612 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 CMKLR1Q99788 373 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 TIMMDC1Q9NPL8 285 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 RNF14Q9UBS8 474 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 KCNN3Q9UGI6 736 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 COL4A2P08572 1712 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 SH3PXD2BA1X283 911 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 C12orf71A8MTZ7 269 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 H3BSA7 217 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 PHGDHO43175 533 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 NRP2O60462 931 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 CBX6O95503 412 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 PROS1P07225 676 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 BRAFP15056 766 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 CSRP1P21291 193 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 FECHP22830 423 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 ALDH6A1Q02252 535 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 RUNX1T1Q06455 604 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 BMPR2Q13873 1038 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 LY6DQ14210 128 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 SIX1Q15475 284 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 FSTL5Q8N475 847 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 TBC1D19Q8N5T2 526 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 FBXO36Q8NEA4 188 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 DENND6BQ8NEG7 585 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 SGK3Q96BR1 496 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 FCRL3Q96P31 734 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 OR6C1Q96RD1 312 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 ZNF71Q9NQZ8 489 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 SLC39A1Q9NY26 324 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 PCDHGB3Q9Y5G1 929 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 B3GALT1Q9Y5Z6 326 aa7.62□□□□□ -1.19
LIMCH1-219ENST00000514096 A0A0G2JN53 185 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SMIM31A0A1B0GVY4 71 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 USP1O94782 785 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 CPNE6O95741 557 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 EEF1DP29692 281 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 RPL21P46778 160 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 MEF2AQ02078 507 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 ERV3-1Q14264 604 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 GPR19Q15760 415 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 HIF1AQ16665 826 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 ISXQ2M1V0 245 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SMYD5Q6GMV2 418 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 MILR1Q7Z6M3 343 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 CREG2Q8IUH2 290 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 CPNE9Q8IYJ1 553 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 AMER2Q8N7J2 671 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 ANKRD53Q8N9V6 530 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 ATL1Q8WXF7 558 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 EME1Q96AY2 570 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SNF8Q96H20 258 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 CNBD2Q96M20 576 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 MIPEPQ99797 713 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 EGFL8Q99944 293 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 TEX101Q9BY14 249 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 AKIRIN1Q9H9L7 192 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 S100A14Q9HCY8 104 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 MYOCOSA0A1B0GUC4 107 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SLC9B1P1A6NJY1 282 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SDR42E2A6NKP2 422 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 FOXO6A8MYZ6 492 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 PLD2O14939 933 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 POLR1CO15160 346 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 NOBOXO60393 691 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 F10P00742 488 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 OR56A5P0C7T3 313 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 STMN1P16949 149 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 CD9P21926 228 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 ADRA1DP25100 572 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 CPA2P48052 419 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 STX1BP61266 288 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 RPS18P62269 152 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 CTAG1AP78358 180 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 B4GALNT1Q00973 533 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 DBPQ10586 325 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SLC14A1Q13336 389 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 ACAP2Q15057 778 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 COL28A1Q2UY09 1125 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 LDLRAP1Q5SW96 308 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 RGS9BPQ6ZS82 235 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 PIWIL4Q7Z3Z4 852 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 SNX20Q7Z614 316 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 VANGL1Q8TAA9 524 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 FBXO25Q8TCJ0 367 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 NAT6Q93015 286 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 CHID1Q9BWS9 393 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 RBCK1Q9BYM8 510 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 DENND2DQ9H6A0 471 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 RPRD1BQ9NQG5 326 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 POLG2Q9UHN1 485 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 TCAF1Q9Y4C2 921 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 MAU2Q9Y6X3 613 aa7.61□□□□□ -1.19
LIMCH1-219ENST00000514096 CREBBPQ92793 2442 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms