RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 MTFMTQ96DP5 389 aaKnown RBP11.36□□□□□ -0.59
CUX1-210ENST00000497815 THAP11Q96EK4 314 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 CNDP1Q96KN2 507 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 SLC46A1Q96NT5 459 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 KCNA7Q96RP8 456 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 NDC1Q9BTX1 674 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 DDA1Q9BW61 102 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 NLNQ9BYT8 704 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 ASPSCR1Q9BZE9 553 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 ULBP3Q9BZM4 244 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 NT5DC2Q9H857 520 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 TRPS1Q9UHF7 1281 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 ZFP69BQ9UJL9 534 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 ZNF225Q9UK10 706 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 STK38LQ9Y2H1 464 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 MSRB2Q9Y3D2 182 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 FIS1Q9Y3D6 152 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 AP1M2Q9Y6Q5 423 aa11.36□□□□□ -0.59
CUX1-210ENST00000497815 HYKKA2RU49 373 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 ITM2AO43736 263 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 LYPLA1O75608 230 aaPredicted RBP11.35□□□□□ -0.59
CUX1-210ENST00000497815 KIAA0754O94854 1291 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 ESRRBO95718 433 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 HSPA4LO95757 839 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 SERPINE1P05121 402 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 CAPN1P07384 714 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 SLC35G6P0C7Q6 338 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 HMOX2P30519 316 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 ARRB2P32121 409 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 AHRP35869 848 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 PKNOX1P55347 436 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 NAA20P61599 178 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 E2F2Q14209 437 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 RCN2Q14257 317 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 GRM7Q14831 915 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 RTP5Q14D33 572 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.35□□□□□ -0.59
CUX1-210ENST00000497815 TCHHL1Q5QJ38 904 aaPredicted RBP11.35□□□□□ -0.59
CUX1-210ENST00000497815 C1orf189Q5VU69 101 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 VN1R5Q7Z5H4 357 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 CUZD1Q86UP6 607 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 BPHLQ86WA6 291 aaPredicted RBP11.35□□□□□ -0.59
CUX1-210ENST00000497815 LAS2Q8IYD9 372 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 LSMEM2Q8N112 164 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 METTL27Q8N6F8 245 aaPredicted RBP11.35□□□□□ -0.59
CUX1-210ENST00000497815 KCT2Q8NC54 265 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 CAMKVQ8NCB2 501 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 TRPV3Q8NET8 790 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 METTL6Q8TCB7 284 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 DYDC1Q8WWB3 177 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 REPS1Q96D71 796 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 CLIP3Q96DZ5 547 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 ZNF285Q96NJ3 590 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 MTERF1Q99551 399 aaKnown RBP11.35□□□□□ -0.59
CUX1-210ENST00000497815 SARGQ9BW04 601 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 ELOVL6Q9H5J4 265 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 ZNF395Q9H8N7 513 aaPredicted RBP11.35□□□□□ -0.59
CUX1-210ENST00000497815 ACTR5Q9H9F9 607 aaPredicted RBP11.35□□□□□ -0.59
CUX1-210ENST00000497815 TNFRSF12AQ9NP84 129 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 INTS9Q9NV88 658 aaKnown RBP11.35□□□□□ -0.59
CUX1-210ENST00000497815 WDR70Q9NW82 654 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 NDOR1Q9UHB4 597 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 ANGPTL2Q9UKU9 493 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 RUVBL1Q9Y265 456 aaKnown RBP11.35□□□□□ -0.59
CUX1-210ENST00000497815 TIMM22Q9Y584 194 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 PCDHGA3Q9Y5H0 932 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 PCDHGA11Q9Y5H2 935 aa11.35□□□□□ -0.59
CUX1-210ENST00000497815 TEX51A0A1B0GUA7 166 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 TMEM114B3SHH9 223 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 H0YIV9 168 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 H3BMH7 237 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 SNRNP200O75643 2136 aaKnown RBP11.34□□□□□ -0.59
CUX1-210ENST00000497815 STK17BO94768 372 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 ALAS2P22557 587 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 SERPINB3P29508 390 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 FOXA1P55317 472 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 ABCE1P61221 599 aaKnown RBP11.34□□□□□ -0.59
CUX1-210ENST00000497815 RGS1Q08116 209 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 IFT88Q13099 833 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 STX3Q13277 289 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 PRTGQ2VWP7 1150 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 GGTA1PQ4G0N0 100 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 TOR1AIP1Q5JTV8 583 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 FRG2Q64ET8 278 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 CLEC6AQ6EIG7 209 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 TLDC1Q6P9B6 456 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 ATG14Q6ZNE5 492 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 TTLL10Q6ZVT0 673 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 ERMP1Q7Z2K6 904 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 ZFAND4Q86XD8 727 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 DTWD1Q8N5C7 304 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 SLC38A9Q8NBW4 561 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 TTLQ8NG68 377 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 OR6Y1Q8NGX8 325 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 HUS1BQ8NHY5 278 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 CREB3L4Q8TEY5 395 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 TM4SF19Q96DZ7 209 aa11.34□□□□□ -0.59
CUX1-210ENST00000497815 MAGEB10Q96LZ2 347 aaPredicted RBP11.34□□□□□ -0.59
CUX1-210ENST00000497815 TEFMQ96QE5 360 aaKnown RBP11.34□□□□□ -0.59
CUX1-210ENST00000497815 FRG2BQ96QU4 278 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms