RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 BRIX1Q8TDN6 353 aaKnown RBP12.06□□□□□ -0.48
PTPRF-214ENST00000496043 ANKRD7Q92527 254 aa12.06□□□□□ -0.48
PTPRF-214ENST00000496043 HAS2Q92819 552 aa12.06□□□□□ -0.48
PTPRF-214ENST00000496043 VPS39Q96JC1 886 aa12.06□□□□□ -0.48
PTPRF-214ENST00000496043 PDLIM2Q96JY6 352 aa12.06□□□□□ -0.48
PTPRF-214ENST00000496043 KRT12Q99456 494 aa12.06□□□□□ -0.48
PTPRF-214ENST00000496043 WDR83Q9BRX9 315 aaKnown RBP12.06□□□□□ -0.48
PTPRF-214ENST00000496043 SARGQ9BW04 601 aa12.06□□□□□ -0.48
PTPRF-214ENST00000496043 VN1R1Q9GZP7 353 aa12.06□□□□□ -0.48
PTPRF-214ENST00000496043 NSMCE4AQ9NXX6 385 aa12.06□□□□□ -0.48
PTPRF-214ENST00000496043 C19orf25Q9UFG5 118 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-214ENST00000496043 NTNG1Q9Y2I2 539 aa12.06□□□□□ -0.48
PTPRF-214ENST00000496043 FLNCQ14315 2725 aa12.06□□□□□ -0.48
PTPRF-214ENST00000496043 SHANK1Q9Y566 2161 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 E7ESA3 106 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 JRKO75564 520 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 SLC35G6P0C7Q6 338 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 MYBL2P10244 700 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 IL1RNP18510 177 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 IL10P22301 178 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 SOX11P35716 441 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 XCR1P46094 333 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 RPL21P46778 160 aaKnown RBP12.05□□□□□ -0.48
PTPRF-214ENST00000496043 SNRPNP63162 240 aaKnown RBP12.05□□□□□ -0.48
PTPRF-214ENST00000496043 PWP1Q13610 501 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 HERC3Q15034 1050 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 MINDY4Q4G0A6 757 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 TMEM207Q6UWW9 146 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 PRSS41Q7RTY9 318 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 MAATS1Q7Z4T9 603 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 CPEB2Q7Z5Q1 589 aaKnown RBP12.05□□□□□ -0.48
PTPRF-214ENST00000496043 ZC3HC1Q86WB0 502 aaKnown RBP12.05□□□□□ -0.48
PTPRF-214ENST00000496043 SIRT6Q8N6T7 355 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 GRHL3Q8TE85 626 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 FAR1Q8WVX9 515 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 IMMP1LQ96LU5 166 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 PLA2G3Q9NZ20 509 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 STMN3Q9NZ72 180 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 HCN3Q9P1Z3 774 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 PYCARDQ9ULZ3 195 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 NAALAD2Q9Y3Q0 740 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 DYRK1BQ9Y463 629 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 PSAT1Q9Y617 370 aa12.05□□□□□ -0.48
PTPRF-214ENST00000496043 TRAV17A0A0B4J275 112 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 FAM95CA0A1B0GW59 222 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 TRBC2A0A5B9 178 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 FAM187AA6NFU0 413 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 TP73O15350 636 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 SERPIND1P05546 499 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 ITGAMP11215 1152 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 AGTR2P50052 363 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 SLC12A2P55011 1212 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 MEF2AQ02078 507 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-214ENST00000496043 ACTN3Q08043 901 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-214ENST00000496043 RGS1Q08116 209 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 CALCOCO2Q13137 446 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 C4orf17Q53FE4 359 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 CATSPEREQ5SY80 951 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 NIPAL1Q6NVV3 410 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 THOC6Q86W42 341 aaKnown RBP12.04□□□□□ -0.48
PTPRF-214ENST00000496043 ZBED8Q8IZ13 594 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 ST6GALNAC3Q8NDV1 305 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 PLPP5Q8NEB5 264 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 ZCCHC10Q8TBK6 192 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 PYROXD1Q8WU10 500 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 SLC5A11Q8WWX8 675 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 OR4K3Q96R72 315 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 ERP44Q9BS26 406 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.04□□□□□ -0.481e-6■■■□□ 15.4
PTPRF-214ENST00000496043 CTNNAL1Q9UBT7 734 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 PLEKHB1Q9UF11 243 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-214ENST00000496043 TEKT2Q9UIF3 430 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 ZFP69BQ9UJL9 534 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 IKZF3Q9UKT9 509 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 SLC5A6Q9Y289 635 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 KCNE2Q9Y6J6 123 aa12.04□□□□□ -0.48
PTPRF-214ENST00000496043 MDC1Q14676 2089 aaKnown RBP12.04□□□□□ -0.48
PTPRF-214ENST00000496043 DOCK10Q96BY6 2186 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 PTPN13Q12923 2485 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 RELNP78509 3460 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 URADA6NGE7 173 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 A8MUI8 341 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 CDC7O00311 574 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 NDUFS4O43181 175 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 H2AFYO75367 372 aaKnown RBP12.03□□□□□ -0.48
PTPRF-214ENST00000496043 RDH16O75452 317 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 CELA2AP08217 269 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 EDN3P14138 238 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 ZNF37AP17032 561 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-214ENST00000496043 ALOX12P18054 663 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 AHRP35869 848 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 HNMTP50135 292 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 TNFSF10P50591 281 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 TAS2R39P59534 338 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 SKP1P63208 163 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 CDKL1Q00532 357 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 FASTKD3Q14CZ7 662 aaKnown RBP12.03□□□□□ -0.48
PTPRF-214ENST00000496043 RBBP5Q15291 538 aaKnown RBP12.03□□□□□ -0.48
PTPRF-214ENST00000496043 ABHD17BQ5VST6 288 aa12.03□□□□□ -0.48
PTPRF-214ENST00000496043 FAM180AQ6UWF9 173 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms