RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	PRPF4	O43172	522 aa	Known RBP eCLIP	11	□□□□□ -0.65
VTI1A-208	ENST00000494728	MAN1A2	O60476	641 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	PIAS1	O75925	651 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	WISP2	O76076	250 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	C8orf89	P0DMQ9	161 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	NPPB	P16860	134 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	XCR1	P46094	333 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	ARG2	P78540	354 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	MRPS25	P82663	173 aa	Known RBP	11	□□□□□ -0.65
VTI1A-208	ENST00000494728	PPP1R3A	Q16821	1122 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	MINDY4	Q4G0A6	757 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	HECTD2	Q5U5R9	776 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	STEAP4	Q687X5	459 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	ZNF324B	Q6AW86	544 aa	Predicted RBP	11	□□□□□ -0.65
VTI1A-208	ENST00000494728	FCRLB	Q6BAA4	426 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	HIBCH	Q6NVY1	386 aa	Predicted RBP	11	□□□□□ -0.65
VTI1A-208	ENST00000494728	LCTL	Q6UWM7	567 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	SBSN	Q6UWP8	590 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	MAMDC2	Q7Z304	686 aa	Predicted RBP	11	□□□□□ -0.65
VTI1A-208	ENST00000494728	CREG2	Q8IUH2	290 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	KLHL7	Q8IXQ5	586 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	MYO1H	Q8N1T3	1032 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	GPATCH11	Q8N954	259 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	OR1N1	Q8NGS0	311 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	OR56A3	Q8NH54	315 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	OR51Q1	Q8NH59	317 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	TSLP	Q969D9	159 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	NPAS2	Q99743	824 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	GRPEL1	Q9HAV7	217 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	AGPAT4	Q9NRZ5	378 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	TEX264	Q9Y6I9	313 aa		11	□□□□□ -0.65
VTI1A-208	ENST00000494728	GTF3C1	Q12789	2109 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728		H0YIG0	161 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	TXNDC9	O14530	226 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	TTI1	O43156	1089 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	CDC123	O75794	336 aa	Predicted RBP	10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	TTC4	O95801	387 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	GUCA1C	O95843	209 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	DDAH2	O95865	285 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	WDPCP	O95876	746 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	EDN3	P14138	238 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	CXCR2	P25025	360 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	DCT	P40126	519 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	AVPR1B	P47901	424 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	RGS4	P49798	205 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	OLR1	P78380	273 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	PMP22	Q01453	160 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	CATSPERE	Q5SY80	951 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	LRRC8E	Q6NSJ5	796 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	UGT3A1	Q6NUS8	523 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	KIAA0408	Q6ZU52	694 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	GALNT7	Q86SF2	657 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	ASPG	Q86U10	573 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	C17orf64	Q86WR6	236 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	ANKMY2	Q8IV38	441 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	MCOLN3	Q8TDD5	553 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	NEIL2	Q969S2	332 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	C5orf34	Q96MH7	638 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	TSNARE1	Q96NA8	513 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	LMF1	Q96S06	567 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	AICDA	Q9GZX7	198 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	PPAN	Q9NQ55	473 aa	Known RBP	10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	LANCL2	Q9NS86	450 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	ARL15	Q9NXU5	204 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	UTP6	Q9NYH9	597 aa	Known RBP	10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	OSGIN2	Q9Y236	505 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	NAALAD2	Q9Y3Q0	740 aa		10.99	□□□□□ -0.65
VTI1A-208	ENST00000494728	NPEPPSL1	A6NEC2	478 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	SLC16A5	O15375	505 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	NDUFS4	O43181	175 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	LRRTM2	O43300	516 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	ZSCAN12	O43309	604 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	SEC31A	O94979	1220 aa	Known RBP	10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	ZNF37A	P17032	561 aa	Predicted RBP	10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	MST1	P26927	711 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	ITGA8	P53708	1063 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	KCNK10	P57789	538 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	RHAG	Q02094	409 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	PDAP1	Q13442	181 aa	Known RBP	10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	ELOA	Q14241	798 aa	Known RBP	10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	MORF4L2	Q15014	288 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	NDUFA9	Q16795	377 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	C18orf21	Q32NC0	220 aa	Predicted RBP	10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	MFSD4B	Q5TF39	518 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	CAPN13	Q6MZZ7	669 aa	Predicted RBP	10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	RPUSD3	Q6P087	351 aa	Known RBP	10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	FAM180A	Q6UWF9	173 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	RIPOR1	Q6ZS17	1223 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	ANKRD37	Q7Z713	158 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	AFAP1L2	Q8N4X5	818 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	ANKRD53	Q8N9V6	530 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	MFSD9	Q8NBP5	474 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	ABHD11	Q8NFV4	315 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	OR4K1	Q8NGD4	311 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	SLC13A3	Q8WWT9	602 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	PEX11G	Q96HA9	241 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	VPS50	Q96JG6	964 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	MAGEB10	Q96LZ2	347 aa	Predicted RBP	10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	CYTH2	Q99418	400 aa		10.98	□□□□□ -0.65
VTI1A-208	ENST00000494728	HES7	Q9BYE0	225 aa		10.98	□□□□□ -0.65

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