RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 KLRC4-KLRK1H3BQV0 150 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 HAT1O14929 419 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 PROM1O43490 865 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 TJP3O95049 919 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 TPM3P06753 285 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 IL10P22301 178 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 ADRA1DP25100 572 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 BCL6P41182 706 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 HLCSP50747 726 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 NUP107P57740 925 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 MLF1P58340 268 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 MPP1Q00013 466 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 RHAGQ02094 409 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 ABRAXAS2Q15018 415 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 EMC4Q5J8M3 183 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 PRSS41Q7RTY9 318 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 CCDC71Q8IV32 467 aaPredicted RBP13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 ARMC10Q8N2F6 343 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 RPRMLQ8N4K4 120 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 FAM71DQ8N9W8 422 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 ZFP62Q8NB50 900 aaPredicted RBP13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 ZNF778Q96MU6 729 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 OR1F2PQ96R84 312 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 FAM114A2Q9NRY5 505 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 CATSPERZQ9NTU4 200 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 HCN3Q9P1Z3 774 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 PCDHA3Q9Y5H8 950 aa13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 FN1P02751 2386 aaKnown RBP13.36□□□□□ -0.27
PRPF40A-211ENST00000493468 KCNE1BA0A087WTH5 132 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 OR2W5A6NFC9 320 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 ARHGEF33A8MVX0 844 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 HS6ST1O60243 411 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 PSIP1O75475 530 aaKnown RBP13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 ITGA8P53708 1063 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 PNLIPRP1P54315 467 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 ACTN3Q08043 901 aaPredicted RBP13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 PMPCAQ10713 525 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 NSDHLQ15738 373 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 TMEM214Q6NUQ4 689 aaKnown RBP13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 VN1R4Q7Z5H5 301 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 LDB1Q86U70 411 aaPredicted RBP13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 SULF2Q8IWU5 870 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 PANX2Q96RD6 677 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 CLEC4MQ9H2X3 399 aaPredicted RBP13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 LIME1Q9H400 295 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 LANCL2Q9NS86 450 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 MARCH4Q9P2E8 410 aaPredicted RBP13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 TCAF1Q9Y4C2 921 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 CSPG4Q6UVK1 2322 aa13.35□□□□□ -0.27
PRPF40A-211ENST00000493468 FCHO1O14526 889 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 CDC40O60508 579 aaKnown RBP eCLIP13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 IL1RNP18510 177 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 PEX19P40855 299 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 CETN2P41208 172 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 DLX5P56178 289 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 RPS15AP62244 130 aaKnown RBP13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 TAOK1Q7L7X3 1001 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 ADCK2Q7Z695 626 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 SHISA5Q8N114 240 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 THAP11Q96EK4 314 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 SLC6A16Q9GZN6 736 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 ANKHQ9HCJ1 492 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 RASSF1Q9NS23 344 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 PLEKHA6Q9Y2H5 1048 aa13.34□□□□□ -0.27
PRPF40A-211ENST00000493468 E7ENX8 843 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 GOLGA6L19H0YKK7 550 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 SGK494L7N484 410 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 CD3EAPO15446 510 aaKnown RBP13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 PEX1O43933 1283 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 MFAP3LO75121 409 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 CATP04040 527 aaKnown RBP13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 TPM1P09493 284 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 HRH2P25021 359 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 GDF10P55107 478 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 OR4D2P58180 307 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 TAP2Q03519 686 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 TSTA3Q13630 321 aaPredicted RBP13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 CTSL3PQ5NE16 218 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 MEI1Q5TIA1 1274 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 PAOXQ6QHF9 649 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 ARSKQ6UWY0 536 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 PAMR1Q6UXH9 720 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 PLD3Q8IV08 490 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 KIF2BQ8N4N8 673 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 FBXO15Q8NCQ5 510 aaPredicted RBP13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 OR5M3Q8NGP4 307 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 ZNF480Q8WV37 535 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 TSLPQ969D9 159 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 C18orf12Q96KH6 178 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 PKP4Q99569 1192 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 GPATCH1Q9BRR8 931 aaKnown RBP13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 SARGQ9BW04 601 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 FAM129AQ9BZQ8 928 aa13.33□□□□□ -0.28
PRPF40A-211ENST00000493468 H3BMM5 538 aa13.32□□□□□ -0.28
PRPF40A-211ENST00000493468 SMAPO00193 183 aa13.32□□□□□ -0.28
PRPF40A-211ENST00000493468 RDH16O75452 317 aa13.32□□□□□ -0.28
PRPF40A-211ENST00000493468 NDUFS3O75489 264 aa13.32□□□□□ -0.28
PRPF40A-211ENST00000493468 SLC16A8O95907 504 aa13.32□□□□□ -0.28
PRPF40A-211ENST00000493468 ACVR2AP27037 513 aa13.32□□□□□ -0.28
PRPF40A-211ENST00000493468 RFC3P40938 356 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms