RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 CSTF3Q12996 717 aaKnown RBP11.7□□□□□ -0.54
HDAC6-230ENST00000488543 LRRC23Q53EV4 343 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-230ENST00000488543 CATSPEREQ5SY80 951 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 DUS1LQ6P1R4 473 aaKnown RBP11.7□□□□□ -0.54
HDAC6-230ENST00000488543 PRMT9Q6P2P2 845 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 SLC2A7Q6PXP3 512 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 LPCAT2Q7L5N7 544 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 SLC22A18ASQ8N1D0 253 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 DPP10Q8N608 796 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 RAD51AP1Q96B01 352 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 OSBPL11Q9BXB4 747 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 RMI1Q9H9A7 625 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 CARS2Q9HA77 564 aaKnown RBP11.7□□□□□ -0.54
HDAC6-230ENST00000488543 SPATA6Q9NWH7 488 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-230ENST00000488543 GID8Q9NWU2 228 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 RHBDL2Q9NX52 303 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 NDUFA13Q9P0J0 144 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 PCDHA9Q9Y5H5 950 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 KCNE2Q9Y6J6 123 aa11.7□□□□□ -0.54
HDAC6-230ENST00000488543 PRSS38A1L453 326 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 DYTNA2CJ06 578 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 IFRD1O00458 451 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-230ENST00000488543 AMD1P17707 334 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 BCKDHBP21953 392 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 AKT2P31751 481 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 CLCNKAP51800 687 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 HPCAP84074 193 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 TRAP1Q12931 704 aaKnown RBP11.69□□□□□ -0.54
HDAC6-230ENST00000488543 NFYCQ13952 458 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 CACHD1Q5VU97 1274 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 ERMP1Q7Z2K6 904 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 TMPRSS11BQ86T26 416 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 KRTCAP2Q8N6L1 136 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 OR5K2Q8NHB8 316 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 TMEM125Q96AQ2 219 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 SEPHS2Q99611 448 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 ACSL5Q9ULC5 683 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 NEUROG3Q9Y4Z2 214 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 A0A1W2PPC4 97 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 PRAMEF26H0Y7S4 382 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 HOXC4P09017 264 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-230ENST00000488543 ZNF23P17027 643 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 SDC1P18827 310 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 TACR1P25103 407 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 AK4P27144 223 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-230ENST00000488543 CCR5P51681 352 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 KIAA1024LP59773 190 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 NFATC4Q14934 902 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 ATG9BQ674R7 924 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 DLEU7Q6UYE1 221 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 TMEFF1Q8IYR6 380 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 KIAA2013Q8IYS2 634 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 DENND6BQ8NEG7 585 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 OR7G3Q8NG95 312 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 CLHC1Q8NHS4 586 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 SLC6A18Q96N87 628 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 INSM2Q96T92 566 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-230ENST00000488543 DPY30Q9C005 99 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 CLMPQ9H6B4 373 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 CCDC177Q9NQR7 707 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-230ENST00000488543 CDC14AQ9UNH5 594 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 TDRKHQ9Y2W6 561 aaKnown RBP11.69□□□□□ -0.54
HDAC6-230ENST00000488543 DYRK1BQ9Y463 629 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 LRP4O75096 1905 aa11.69□□□□□ -0.54
HDAC6-230ENST00000488543 PRAMEF33A0A0G2JMD5 474 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 EI24O14681 340 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 NDUFS2O75306 463 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 ETHE1O95571 254 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 SLC35G4P0C7Q5 338 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 C1GALT1C1LP0DN25 315 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 ACPPP15309 386 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 RPL6Q02878 288 aaKnown RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 SIGLEC14Q08ET2 396 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 TSTA3Q13630 321 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 CYP2A13Q16696 494 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 CYP51A1Q16850 503 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 CLVS1Q8IUQ0 354 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 CAMKK1Q8N5S9 505 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 EDAQ92838 391 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 MTERF1Q99551 399 aaKnown RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 TMEM168Q9H0V1 697 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 SPNS1Q9H2V7 528 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 TCEAL2Q9H3H9 227 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 PRDM8Q9NQV8 689 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 RSL24D1Q9UHA3 163 aaKnown RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 KLF15Q9UIH9 416 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 CNOT11Q9UKZ1 510 aaKnown RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 TMED5Q9Y3A6 229 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 RNF103-CHMP3A0A140T963 221 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 METTL12A8MUP2 240 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 AXIN1O15169 862 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 PRPS2P11908 318 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 HSD3B1P14060 373 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 HSD3B2P26439 372 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 GSK3BP49841 420 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 CLDN8P56748 225 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 DDX39BQ13838 428 aaKnown RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 SLBPQ14493 270 aaKnown RBP eCLIP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 PLCL1Q15111 1095 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms