RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 OLFM1Q99784 485 aa8.39□□□□□ -1.07
USP4-213ENST00000488520 NUDT9Q9BW91 350 aa8.39□□□□□ -1.07
USP4-213ENST00000488520 GPR87Q9BY21 358 aa8.39□□□□□ -1.07
USP4-213ENST00000488520 IQCGQ9H095 443 aaKnown RBP8.39□□□□□ -1.07
USP4-213ENST00000488520 OR52A5Q9H2C5 316 aa8.39□□□□□ -1.07
USP4-213ENST00000488520 SRMSQ9H3Y6 488 aa8.39□□□□□ -1.07
USP4-213ENST00000488520 CAB39LQ9H9S4 337 aa8.39□□□□□ -1.07
USP4-213ENST00000488520 FGF21Q9NSA1 209 aa8.39□□□□□ -1.07
USP4-213ENST00000488520 WDR37Q9Y2I8 494 aa8.39□□□□□ -1.07
USP4-213ENST00000488520 POLEQ07864 2286 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 A0A096LPK6 155 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 PHGDHO43175 533 aaKnown RBP8.38□□□□□ -1.07
USP4-213ENST00000488520 DPM1O60762 260 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 ADAM11O75078 769 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 SCRG1O75711 98 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 SHBGP04278 402 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 C2P06681 752 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 RBP1P09455 135 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 LTA4HP09960 611 aaKnown RBP8.38□□□□□ -1.07
USP4-213ENST00000488520 COL6A2P12110 1019 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 ACY1Q03154 408 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 GPS2Q13227 327 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 CSHL1Q14406 222 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 GPR19Q15760 415 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 TSNAXIP1Q2TAA8 658 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 BEND6Q5SZJ8 279 aaPredicted RBP8.38□□□□□ -1.07
USP4-213ENST00000488520 CEP85LQ5SZL2 805 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 PRAMEF17Q5VTA0 474 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 LCN10Q6JVE6 187 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 CYB5D1Q6P9G0 228 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 FBXO38Q6PIJ6 1188 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 LRIG3Q6UXM1 1119 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 TIFABQ6ZNK6 161 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 TDRPQ86YL5 185 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 VRK3Q8IV63 474 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 CEP97Q8IW35 865 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 CISD2Q8N5K1 135 aaKnown RBP8.38□□□□□ -1.07
USP4-213ENST00000488520 ENDOVQ8N8Q3 282 aaKnown RBP8.38□□□□□ -1.07
USP4-213ENST00000488520 SLC38A9Q8NBW4 561 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 OR4E2Q8NGC2 313 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 OR2W6PQ8NHA6 318 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 OR5K2Q8NHB8 316 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 STAG3L4Q8TBR4 150 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 ACMSDQ8TDX5 336 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 ANKRD7Q92527 254 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 SNRNP40Q96DI7 357 aaKnown RBP8.38□□□□□ -1.07
USP4-213ENST00000488520 CCDC138Q96M89 665 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 EGFL8Q99944 293 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 RAB11FIP5Q9BXF6 653 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 CHST8Q9H2A9 424 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 PARVBQ9HBI1 364 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 SNX15Q9NRS6 342 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 ASF1BQ9NVP2 202 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 EPHA6Q9UF33 1036 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 DCDC2Q9UHG0 476 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 RNF112Q9ULX5 631 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 SNX7Q9UNH6 387 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 PKDREJQ9NTG1 2253 aa8.38□□□□□ -1.07
USP4-213ENST00000488520 SCN2AQ99250 2005 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 ANKRD17O75179 2603 aaKnown RBP8.37□□□□□ -1.07
USP4-213ENST00000488520 SYCE1LA8MT33 242 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 BTN3A1O00481 513 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 COPEO14579 308 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 CPNE3O75131 537 aaKnown RBP8.37□□□□□ -1.07
USP4-213ENST00000488520 KLHL2O95198 593 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 MATN4O95460 622 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 C1orf105O95561 183 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 C1QAP02745 245 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 ANXA5P08758 320 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 ENO2P09104 434 aaPredicted RBP8.37□□□□□ -1.07
USP4-213ENST00000488520 ACADLP28330 430 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 SHMT2P34897 504 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 ITGA1P56199 1179 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 GTF3C1Q12789 2109 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 SP140Q13342 867 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 TSTA3Q13630 321 aaPredicted RBP8.37□□□□□ -1.07
USP4-213ENST00000488520 ZNF460Q14592 562 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 ACAP2Q15057 778 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 RASA2Q15283 850 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 PLEKHN1Q494U1 663 aaPredicted RBP8.37□□□□□ -1.07
USP4-213ENST00000488520 UBAP2Q5T6F2 1119 aaKnown RBP8.37□□□□□ -1.07
USP4-213ENST00000488520 C1QL3Q5VWW1 255 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 CYHR1Q6ZMK1 362 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 VN1R5Q7Z5H4 357 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 CMC1Q7Z7K0 106 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 ADAMTSL2Q86TH1 951 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 LCA5Q86VQ0 697 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 AMIGO1Q86WK6 493 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 OOSP2Q86WS3 158 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 GPSM1Q86YR5 675 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 DCUN1D3Q8IWE4 304 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 IQCKQ8N0W5 287 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 SPATA6LQ8N4H0 392 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 OR5AR1Q8NGP9 310 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 OR9A1PQ8NGU1 263 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 ADAMTS17Q8TE56 1095 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 EPS8L3Q8TE67 593 aaKnown RBP8.37□□□□□ -1.07
USP4-213ENST00000488520 UBASH3BQ8TF42 649 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 ATL1Q8WXF7 558 aa8.37□□□□□ -1.07
USP4-213ENST00000488520 ASB11Q8WXH4 323 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms