RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TTC34A8MYJ7 566 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 H0YIV9 168 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 SLC22A1O15245 554 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 LCKP06239 509 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 C8AP07357 584 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 PCSK2P16519 638 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 IDSP22304 550 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 RECQLP46063 649 aaPredicted RBP17.3■□□□□ 0.36
VIM-206ENST00000487938 ST13P50502 369 aaKnown RBP17.3■□□□□ 0.36
VIM-206ENST00000487938 RPS13P62277 151 aaKnown RBP17.3■□□□□ 0.36
VIM-206ENST00000487938 CAMK2GQ13555 558 aaPredicted RBP17.3■□□□□ 0.36
VIM-206ENST00000487938 KCNC3Q14003 757 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 TMEM215Q68D42 235 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 FAHD1Q6P587 224 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 CNKSR3Q6P9H4 555 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 RASGRP3Q8IV61 690 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 ENTHD1Q8IYW4 607 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 OR4K1Q8NGD4 311 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 OR4A15Q8NGL6 344 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 APH1BQ8WW43 257 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 CEP44Q9C0F1 390 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 CHST8Q9H2A9 424 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 HMG20AQ9NP66 347 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 AKIP1Q9NQ31 210 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 PAK6Q9NQU5 681 aaPredicted RBP17.3■□□□□ 0.36
VIM-206ENST00000487938 DAPK2Q9UIK4 370 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 TESMINQ9Y4I5 508 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 DENND4CQ5VZ89 1909 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 TMEM229AB2RXF0 380 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 PCDH7O60245 1069 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 LILRB3O75022 631 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 GCM2O75603 506 aaPredicted RBP17.3■□□□□ 0.36
VIM-206ENST00000487938 CYP2A6P11509 494 aaPredicted RBP17.3■□□□□ 0.36
VIM-206ENST00000487938 TRIM16LQ309B1 348 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 ZNF852Q6ZMS4 543 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 ANKRD33Q7Z3H0 272 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 ADCK1Q86TW2 530 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 ADIPOR2Q86V24 386 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 SPPL2AQ8TCT8 520 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 ZNF300Q96RE9 604 aaPredicted RBP17.3■□□□□ 0.36
VIM-206ENST00000487938 AMBNQ9NP70 447 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 NECTIN3Q9NQS3 549 aa17.3■□□□□ 0.36
VIM-206ENST00000487938 SAP18O00422 153 aaKnown RBP17.29■□□□□ 0.36
VIM-206ENST00000487938 TIMP2P16035 220 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 ZNF30P17039 623 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 IMPA1P29218 277 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 WEE1P30291 646 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 HNF4AP41235 474 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 CRATP43155 626 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 CD97P48960 835 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 FOXD4Q12950 439 aaPredicted RBP17.29■□□□□ 0.36
VIM-206ENST00000487938 DGUOKQ16854 277 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 COX20Q5RI15 118 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 NIPAL1Q6NVV3 410 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 OTOP2Q7RTS6 562 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 TSEN54Q7Z6J9 526 aaKnown RBP17.29■□□□□ 0.36
VIM-206ENST00000487938 NPAS3Q8IXF0 933 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 VPS37AQ8NEZ2 397 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 OR52J3Q8NH60 311 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 CHTF18Q8WVB6 975 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 DNASE1L2Q92874 299 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 TCEAL4Q96EI5 215 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 ALPK1Q96QP1 1244 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 PRDM8Q9NQV8 689 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 TRNAU1APQ9NX07 287 aaKnown RBP17.29■□□□□ 0.36
VIM-206ENST00000487938 ADPRHL2Q9NX46 363 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 PCDHGA6Q9Y5G7 932 aa17.29■□□□□ 0.36
VIM-206ENST00000487938 AP2A2O94973 939 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 CTSAP10619 480 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 TYRP14679 529 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 LAG3P18627 525 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 HPCAL1P37235 193 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 OR1E2P47887 323 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 IFITM3Q01628 133 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 TRIM60Q495X7 471 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 CYP27C1Q4G0S4 372 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 ZNF385BQ569K4 471 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 HENMT1Q5T8I9 393 aaKnown RBP17.28■□□□□ 0.36
VIM-206ENST00000487938 BRAT1Q6PJG6 821 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 FAM124AQ86V42 546 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 SVOPQ8N4V2 548 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 ZNF366Q8N895 744 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 NEIL2Q969S2 332 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 VMP1Q96GC9 406 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 HEPHQ9BQS7 1158 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 BTNL2Q9UIR0 455 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 EXO1Q9UQ84 846 aaKnown RBP17.28■□□□□ 0.36
VIM-206ENST00000487938 TMEM247A6NEH6 219 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 ETFAP13804 333 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 PORP16435 677 aaPredicted RBP17.28■□□□□ 0.36
VIM-206ENST00000487938 CD36P16671 472 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 SYT16Q17RD7 645 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 PROX2Q3B8N5 592 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 CATSPEREQ5SY80 951 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 IER5LQ5T953 404 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 TMEM220Q6QAJ8 160 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 SLC39A5Q6ZMH5 540 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 PRSS48Q7RTY5 328 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 TMPRSS11BQ86T26 416 aa17.28■□□□□ 0.36
VIM-206ENST00000487938 CPA6Q8N4T0 437 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms