RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 SORT1Q99523 831 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 C17orf62Q9BQA9 187 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 TMEM79Q9BSE2 394 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 PIEZO2Q9H5I5 2752 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 PCTPQ9UKL6 214 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 RAP2CQ9Y3L5 183 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 HEMK1Q9Y5R4 338 aaPredicted RBP16.32■□□□□ 0.2
VIM-205ENST00000485947 COL12A1Q99715 3063 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 E7EQ34 232 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 TAPBPO15533 448 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 SIX3O95343 332 aaPredicted RBP16.31■□□□□ 0.2
VIM-205ENST00000485947 MLYCDO95822 493 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 NTRK1P04629 796 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 UGT2B7P16662 529 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 PKLRP30613 574 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 CLCQ05315 142 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 TERF2Q15554 542 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 ARL13AQ5H913 290 aaPredicted RBP16.31■□□□□ 0.2
VIM-205ENST00000485947 LRRC70Q7Z2Q7 622 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 HOMEZQ8IX15 550 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 C19orf47Q8N9M1 422 aaKnown RBP16.31■□□□□ 0.2
VIM-205ENST00000485947 OR9A1PQ8NGU1 263 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 BCAS4Q8TDM0 211 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 PPM1MQ96MI6 270 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 SIKE1Q9BRV8 207 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 CD244Q9BZW8 370 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 C20orf27Q9GZN8 174 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 ILKAPQ9H0C8 392 aaPredicted RBP16.31■□□□□ 0.2
VIM-205ENST00000485947 CLMPQ9H6B4 373 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 XKR8Q9H6D3 395 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 INTS7Q9NVH2 962 aaKnown RBP16.31■□□□□ 0.2
VIM-205ENST00000485947 SPATA7Q9P0W8 599 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 OPTCQ9UBM4 332 aa16.31■□□□□ 0.2
VIM-205ENST00000485947 TDRKHQ9Y2W6 561 aaKnown RBP16.31■□□□□ 0.2
VIM-205ENST00000485947 ZNF839A8K0R7 811 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 TMEM150CB9EJG8 249 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 K7EPI3 171 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 MEN1O00255 615 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 E2F3O00716 465 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 KATNA1O75449 491 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 LYPLA1O75608 230 aaPredicted RBP16.3■□□□□ 0.2
VIM-205ENST00000485947 STK16O75716 305 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 PRKAR1AP10644 381 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 RORAP35398 523 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 HSD17B2P37059 387 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 SLC6A12P48065 614 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 AGTR2P50052 363 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 LCP2Q13094 533 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 ARHGAP19Q14CB8 494 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 UGT8Q16880 541 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 WDR75Q8IWA0 830 aaKnown RBP16.3■□□□□ 0.2
VIM-205ENST00000485947 DSELQ8IZU8 1212 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 OR2L8Q8NGY9 312 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 OR1L3Q8NH93 324 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 FLVCR1-AS1Q8TAF5 88 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 HMGCLL1Q8TB92 370 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 PIWIL2Q8TC59 973 aaKnown RBP16.3■□□□□ 0.2
VIM-205ENST00000485947 N4BP2L2Q92802 583 aaPredicted RBP16.3■□□□□ 0.2
VIM-205ENST00000485947 PKP4Q99569 1192 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 NLNQ9BYT8 704 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 TRIM55Q9BYV6 548 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 FAM107BQ9H098 131 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 ACTR5Q9H9F9 607 aaPredicted RBP16.3■□□□□ 0.2
VIM-205ENST00000485947 STOX2Q9P2F5 926 aaPredicted RBP16.3■□□□□ 0.2
VIM-205ENST00000485947 FARSAQ9Y285 508 aaKnown RBP16.3■□□□□ 0.2
VIM-205ENST00000485947 KCNMB2Q9Y691 235 aa16.3■□□□□ 0.2
VIM-205ENST00000485947 LRRC14BA6NHZ5 514 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 SLCO1B7G3V0H7 640 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 NDUFAB1O14561 156 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 CCNT2O60583 730 aaKnown RBP16.29■□□□□ 0.2
VIM-205ENST00000485947 AGXTP21549 392 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 ARRB2P32121 409 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 HSPA7P48741 367 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 NFATC3Q12968 1075 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 GTF2H2Q13888 395 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 NAA25Q14CX7 972 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 DEFB109BQ30KR1 87 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 CGB2Q6NT52 195 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 GTF2H2CQ6P1K8 395 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 TLDC1Q6P9B6 456 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 AGTRAPQ6RW13 159 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 MBOAT1Q6ZNC8 495 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 APLFQ8IW19 511 aaPredicted RBP16.29■□□□□ 0.2
VIM-205ENST00000485947 AFAP1L2Q8N4X5 818 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 ZNF473Q8WTR7 871 aaKnown RBP16.29■□□□□ 0.2
VIM-205ENST00000485947 MR1Q95460 341 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 CLIP3Q96DZ5 547 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 MENTQ9BUN1 341 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 ACTL8Q9H568 366 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 ENAMQ9NRM1 1142 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 KLHL14Q9P2G3 628 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 SRPK3Q9UPE1 567 aa16.29■□□□□ 0.2
VIM-205ENST00000485947 TLN1Q9Y490 2541 aaKnown RBP16.28■□□□□ 0.2
VIM-205ENST00000485947 ISM1B1AKI9 464 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 SNX3O60493 162 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 CHRNGP07510 517 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 ERGP11308 486 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 IMPA1P29218 277 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 PKNOX1P55347 436 aa16.28■□□□□ 0.2
VIM-205ENST00000485947 ERV3-1Q14264 604 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms